View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_high_6 (Length: 423)
Name: NF5026_high_6
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 41603527 - 41603916
Alignment:
| Q |
16 |
ctgtgaaaacagacagaaagatagaaaacttgttttaatcaactttaaagcttttgtatacatattcatttcataaatcaatttattaggtggaacagaa |
115 |
Q |
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| T |
41603527 |
ctgtgaaaacagacagaaagatagaaaacttgttttaatcaactttaaagcttttgtatacgtattcatttcataaatcaatttattaggtggaacagaa |
41603626 |
T |
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| Q |
116 |
ttaccggttaatgatgaagatggatggatactcacaaggtgtttcagaagcaagaattgtgggatcctcatagcctggtgttttaacattctctgaagtt |
215 |
Q |
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| T |
41603627 |
ttaccggttaatgatgaagatggatggatactcacaaggtgtttcagaagcaagaattgtgggatcctcatagccaggtgttttaacattctttgaagtt |
41603726 |
T |
|
| Q |
216 |
gaacaaaagcagcccattacattaaattgaattaccacaaaattcacatccagttttttctacaaattaacaatatatattcattcattccagggaagct |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41603727 |
gaacaaaagcagcc-----cattaaattgaattaccacaaaattcacatccagttttctctacaaattaacaatatatattcattcattccagggaagct |
41603821 |
T |
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| Q |
316 |
attggaccaaaagttgcatttgtatatctgcaaatattgtagaaattccaatcaaaatcaattaacttgtcatcatttgagaattggcaaaaggt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41603822 |
attggaccaaaagttgcatttgtatatctgcaaatattgtagaaattccaatcaaaatcaattaacttgtcatcatttgagaattggcaaaaggt |
41603916 |
T |
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