View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_high_7 (Length: 376)
Name: NF5026_high_7
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 33387920 - 33388274
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
104 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387920 |
tgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
33388019 |
T |
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| Q |
105 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
204 |
Q |
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| T |
33388020 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
33388119 |
T |
|
| Q |
205 |
cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc |
304 |
Q |
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| T |
33388120 |
cgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc |
33388219 |
T |
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| Q |
305 |
ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaat |
359 |
Q |
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| T |
33388220 |
ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaat |
33388274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 20817184 - 20816830
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
104 |
Q |
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| T |
20817184 |
tgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacat |
20817085 |
T |
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| Q |
105 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
204 |
Q |
| |
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|||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||| |
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| T |
20817084 |
tcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtac |
20816985 |
T |
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| Q |
205 |
cgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc |
304 |
Q |
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|| | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
20816984 |
tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactc |
20816885 |
T |
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| Q |
305 |
ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaat |
359 |
Q |
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||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||| |
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| T |
20816884 |
ataatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaat |
20816830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 38779167 - 38779315
Alignment:
| Q |
211 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
310 |
Q |
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||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
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| Q |
311 |
tcacccagctttgttaagttaccttcatcatcaattgcacctaagtaat |
359 |
Q |
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||||| |||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
38779267 |
tcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaat |
38779315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
78 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
177 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
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| Q |
178 |
cctaggccgaataaagcaattgggtac |
204 |
Q |
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| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38778443 - 38778513
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctc |
75 |
Q |
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||||||| | ||||||||||||| |||||||| | |||||| ||||| || ||||||||||| | |||||| |
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| T |
38778443 |
tgtcgaacattatcagctgatttaagcgccctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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