View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_high_9 (Length: 350)
Name: NF5026_high_9
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 2898071 - 2897775
Alignment:
| Q |
11 |
caaaggaggcaaactgtagtccacgtataagaccatatttattcgtgtggctcatatccttgtatgacaacacaacattgttttttgcagtgatataatc |
110 |
Q |
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| T |
2898071 |
caaaggaggcaaactgtagtccacgtataagaccatatttattcgtgtggctcatatccttgtatgacaacacaacattgttttttgcagtgatataatc |
2897972 |
T |
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| Q |
111 |
agcaatgttgtggtctagaaccaaacggagaagcctatttaacattagtatatcaatcttctcgaaaaacttctcaaacttggtctgcaacatcacaacg |
210 |
Q |
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| T |
2897971 |
agcaatgttgtggtctagaaccaaacggagaagcctatttaacattagtatatcaatcttctcgaaaaacttctcaaatttggtctgcaacatcacaacg |
2897872 |
T |
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| Q |
211 |
cagtgaccatcactggtgtcccagatgccttccaaattatttataccttgacaccatttgtaaactaaaagaggtggtggctctgaatctgctggct |
307 |
Q |
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| T |
2897871 |
cagtgaccatcactggtgtcccagatgccttccaaattatttataccttgacaccatttgtaaactaaaagaggtggtggctctgaatctgctggct |
2897775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 44781873 - 44782036
Alignment:
| Q |
144 |
cctatttaacattagtatatcaatcttctcgaaaaacttctcaaacttggtctgcaacatcacaacgcagtgaccatcactggtgtcccagatgccttcc |
243 |
Q |
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||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| | || | |
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| T |
44781873 |
cctatttaacattgttaaatcaatcttctcgaaaaatttctcaaacttggtctgcagcatcacaacgcactgaccatcgctggtgtcccagacactttgc |
44781972 |
T |
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| Q |
244 |
aaattatttataccttgacaccatttgtaaactaaaagaggtggtggctctgaatctgctggct |
307 |
Q |
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| T |
44781973 |
aaattattgataccttgacaccatttgtaaaccagaagaggcggtggctcagaatctgcaggct |
44782036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 44781667 - 44781794
Alignment:
| Q |
19 |
gcaaactgtagtccacgtataagaccatatttattcgtgtggctcatatccttgtatgacaacacaacattgttttttgcagtgatataatcagcaatgt |
118 |
Q |
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|||||||| ||||||||||||||||||||| ||| ||||||||||| ||||| ||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
44781667 |
gcaaactgcagtccacgtataagaccatatgaatttgtgtggctcatgtccttatatgacagcacaacattgttttttgccgtgacataatcagcaatgt |
44781766 |
T |
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| Q |
119 |
tgtggtctagaaccaaacggagaagcct |
146 |
Q |
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| T |
44781767 |
tgtggtctagaaccaaacggagaagcct |
44781794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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