View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_13 (Length: 268)
Name: NF5026_low_13
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 82 - 268
Target Start/End: Complemental strand, 53463272 - 53463086
Alignment:
| Q |
82 |
caacatttttggatcactacattagcagctactaataattcacaataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctat |
181 |
Q |
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| T |
53463272 |
caacatttttggatcactacattagcagctactaataattcacaataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctat |
53463173 |
T |
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| Q |
182 |
ccttctgccgcacgccgcttcatttgcatatacacagtaaaatgcgacaatttcagaaagttaccgcagtaactacggcaatttctt |
268 |
Q |
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| T |
53463172 |
ccttctgccgcacgccgcttcatttgcatatacacagtaaaatgcgacaatttcagaaagttaccgcagtaactacggcaatttctt |
53463086 |
T |
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