View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5026_low_17 (Length: 240)
Name: NF5026_low_17
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53462921 - 53462699
Alignment:
| Q |
1 |
actctgagggtcaagttttgctctacatagaggacacatagggtgtttggagagccacgtgtcggcacattggagatgaaaagcgtggttacaaccgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53462921 |
actctgagggtcaagttttgctctacatagaggacacatagggtgtttggagagccacgtgtcggcacattggagatgaaaagcgtggttacaaccgggt |
53462822 |
T |
|
| Q |
101 |
aacagacgagccggttgttcatcaacgatatcgtcaaggcaaacggcgcattcggtgggcgcgagcaattccttaccggtgattttaggaagcttttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53462821 |
aacagacgagccggttgttcatcaacgatatcgtcaaggcaaacggcgcattcggtgggcgcgagcaattccttaccggtgattttaggaagcttttcaa |
53462722 |
T |
|
| Q |
201 |
gatctaaaggggagagacccttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53462721 |
gatctaaaggggagagacccttt |
53462699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University