View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_19 (Length: 237)
Name: NF5026_low_19
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34144585 - 34144365
Alignment:
| Q |
1 |
cttgtattcaactgcattaacaagtataaatttgatgtcaagatctatgaccagtctatgtgtgaaaggattgatttttctgataaaagaaagaggaaaa |
100 |
Q |
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| T |
34144585 |
cttgtattcaactgcattaacaagtataactttgatgtcaagatctatgaccagtctatgtgtgaaaggattgatttttctgacaaaagaaagaggaaaa |
34144486 |
T |
|
| Q |
101 |
agagaagtagatgcagcagtggctcacttgatgcaggaggaacaccaaatagcgtagaagttgtttcagaaaatggtaatgtggatagaagcgtcaaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34144485 |
agagaagtagatgcagcagtggctcacttgatgcaggaggaacaccaaatagcgtagaagttgtttcagaaaatgttaatgtggatagaagcgtcaaatg |
34144386 |
T |
|
| Q |
201 |
tccgcgcacatcagaagacac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34144385 |
tccgcgcacatcagaagacac |
34144365 |
T |
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