View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_2 (Length: 609)
Name: NF5026_low_2
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 2898059 - 2898659
Alignment:
| Q |
1 |
tttgcctcctttgttgctcagtat-atggcctgatattggatctcttgcttcttggattgactcgagcgagagagattgctggtccgccgcagatgccta |
99 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898059 |
tttgcctcctttgttgctcagtattatggcctgatattggatctcttgcttcttggattgactcgagcgagagagattgctggtccgccgcagatgccta |
2898158 |
T |
|
| Q |
100 |
acgagttcattacttattgggacaccaaagttgagaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcac |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2898159 |
acgagttcattacttattgggacactaaagttgagaccaggcatccaattaggctgcattcccggtacatagataaagtttatatgttatttcgtttcac |
2898258 |
T |
|
| Q |
200 |
acatgaggaggctcgggatctcattcagaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898259 |
acatgaggaggctcgggatctcattcagaaatatctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggcca |
2898358 |
T |
|
| Q |
300 |
agagatgcaagaatgaggctcatgaagcatgctgtcaatcttgggcggaatgtcttttgggatctgaaaaaccgtcttcctcgaagcatcacaacactgg |
399 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2898359 |
agagatgcaagaatgaggctcatgaagcatgatgtcaatcttgggaggagtgtcttttgggatatgaaaaaccgtcttcctcgaagcatcacaacactgg |
2898458 |
T |
|
| Q |
400 |
aatgggaaaacagcttcgtttctgtttacagcaaagataatccaaacttgctttttagcatgtgtggatttgaagtgaggatacttcctaaaattagaac |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2898459 |
aatgggaaaacagcttcgtttctgtttacagcaaagataatccaaacttgctttttagcatgtgtggatttgaagtgcggatacttcctaaaattagaac |
2898558 |
T |
|
| Q |
500 |
gactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaaccaaagaaaggacagctactgctttcttaagagttgatgat |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898559 |
gactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaaccaaagaaaggacagctactgctttcttaagagttgatgat |
2898658 |
T |
|
| Q |
600 |
g |
600 |
Q |
| |
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| |
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|
| T |
2898659 |
g |
2898659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 44781637 - 44781341
Alignment:
| Q |
34 |
tattggatctcttgcttcttggattgactcgagcgagagagattgctggtccgccgcagatgcctaacgagttcattacttattgggacaccaaagttga |
133 |
Q |
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|||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
44781637 |
tattggatcttttgcttcttggattgactcgagcaagtgagattgctggtccaccgcagatgcctaacgagtttattacttattgggacaccaaagtgga |
44781538 |
T |
|
| Q |
134 |
gaccaggcatccaattaggctgtattcccggtacatagataaagtttacgtgttatttcgtttcacacatgaggaggctcgggatctcattcagaaatat |
233 |
Q |
| |
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|||||||||||||||| |||||||||| || |||||||| |||| || | |||||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
44781537 |
gaccaggcatccaattcggctgtattctcgatacatagaccgagttcacatcttatttcgcttcacacatgaggaggcccgggatctcattcagcgatat |
44781438 |
T |
|
| Q |
234 |
ctcactgaacaccctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatgaggctcatgaagcatg |
330 |
Q |
| |
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||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
44781437 |
ctcaccgagcatcctgatcctaacaatgagaacatggtggggtacaataataagaagtgttggccaagagatgcaagaatgaggctcatgaagcatg |
44781341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 461 - 600
Target Start/End: Complemental strand, 39877449 - 39877310
Alignment:
| Q |
461 |
gtgtggatttgaagtgaggatacttcctaaaattagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaacc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
39877449 |
gtgtggatttgaagtgaggatacttcctaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatgaacagaca |
39877350 |
T |
|
| Q |
561 |
aaagaaaggacagctactgctttcttaagagttgatgatg |
600 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||| |||| |
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| T |
39877349 |
aaagaaagaacagctgttgccttcttaagagttgacgatg |
39877310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 461 - 600
Target Start/End: Complemental strand, 44780683 - 44780544
Alignment:
| Q |
461 |
gtgtggatttgaagtgaggatacttcctaaaattagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaacc |
560 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
44780683 |
gtgtggatttgaagtgaggatacttccaaaaattagaatgactcaagaagcattcagtaacacaagagatggtgtctggaatctccagaatgaacagaca |
44780584 |
T |
|
| Q |
561 |
aaagaaaggacagctactgctttcttaagagttgatgatg |
600 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||| |||| |
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|
| T |
44780583 |
aaagaaagaacagctgttgccttcttaagagttgacgatg |
44780544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 462
Target Start/End: Complemental strand, 44781245 - 44781119
Alignment:
| Q |
336 |
aatcttgggcggaatgtcttttgggatctgaaaaaccgtcttcctcgaagcatcacaacactggaatgggaaaacagcttcgtttctgtttacagcaaag |
435 |
Q |
| |
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||||||||| ||| ||||||||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| | |
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| T |
44781245 |
aatcttgggaggagtgtcttttgggatatgaagaatcgtcttcctagaagcatcacaactctggaatgggaaaacagctttgtttctgtttatagcaagg |
44781146 |
T |
|
| Q |
436 |
ataatccaaacttgctttttagcatgt |
462 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
44781145 |
ataatccaaacttgctttttagcatgt |
44781119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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