View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_23 (Length: 212)
Name: NF5026_low_23
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_23 |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 2945192 - 2945397
Alignment:
| Q |
7 |
gagatgaaacagttcttatataatgtgtattccggtgacgtgtaattttgtaatatgaattgagtttctgtttttatttaataaattattcaataaaatg |
106 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945192 |
gagatggaacagttcttatataatgtgtattccagtgacgtgtaattttgtaatatgaattgagtttctgtttttatttaataaattattcaataaaata |
2945291 |
T |
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| Q |
107 |
aatttattgtttgagataacatatcgaaatccatagagcaaggtgaaggaacnnnnnnntataaaacaaagcaaagcagaccaacaaaatagatgacggt |
206 |
Q |
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| T |
2945292 |
aatttattgtttgagataacatatcgaaatccatagagcaaggtgaaggaacaaaaaaatatgaaacaaagcaaagcagaccaacaaaatagatgacggt |
2945391 |
T |
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| Q |
207 |
aaaacc |
212 |
Q |
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|||||| |
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| T |
2945392 |
aaaacc |
2945397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 2945057 - 2944949
Alignment:
| Q |
7 |
gagatgaaacagttcttatataatgtgtattccggtgacgtgtaattttgtaatatgaattgagtttctgtttttatttaataaattattcaataaaatg |
106 |
Q |
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|||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2945057 |
gagatggaacagttcttatataatgtgtattccagtcacgtgtaattttgtaatttgaattgagtttgtgtttttatttaataaattattcaataaaatg |
2944958 |
T |
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| Q |
107 |
aatttattg |
115 |
Q |
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| T |
2944957 |
aatttattg |
2944949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 29626772 - 29626671
Alignment:
| Q |
17 |
agttcttatataatgtgtattccggtgacgtgtaattttgtaatatgaattgagtttctgtttttatttaataaattattcaataaaatgaatttattgt |
116 |
Q |
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| T |
29626772 |
agttcttatataatgtgtattccggtgacgtgtaattttgtaattaggattgagattgtgtttttatttaataaattattcaataaaaggattttattgt |
29626673 |
T |
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| Q |
117 |
tt |
118 |
Q |
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|| |
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| T |
29626672 |
tt |
29626671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 2940369 - 2940457
Alignment:
| Q |
124 |
aacatatcgaaatccatagagcaaggtgaaggaacnnnnnnntataaaacaaagcaaagcagaccaacaaaatagatgacggtaaaacc |
212 |
Q |
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| T |
2940369 |
aacacatcgaaatccgtaaagcaaggtgaaggaaccaaaaaatataaaacaaaacaaagcagactaacgaaatacatgacggtaaaacc |
2940457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 52866550 - 52866457
Alignment:
| Q |
16 |
cagttcttatataatgtgtattccggtgacgtgtaattttgtaatatgaattgagtttctgtttttatttaataaattattcaataaaatgaatttattg |
115 |
Q |
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| T |
52866550 |
cagttcttatataatgtatattcaggtgacgtgtaattttgtaattaggattga------gattgtatttaataaattattcaataaaaggaatttattg |
52866457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 21193141 - 21193051
Alignment:
| Q |
124 |
aacatatcgaaatccatagagcaaggtgaaggaacnnnnnnn--tataaaacaaagcaaagcagaccaacaaaatagatgacggtaaaacc |
212 |
Q |
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|||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21193141 |
aacatatcaaaatccataaagcaaggtgaaggaacaaaaaaaaatataaaacaaagcaaagcagaccaacaaaatagatgacactaaaacc |
21193051 |
T |
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