View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_7 (Length: 379)
Name: NF5026_low_7
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 41133339 - 41133514
Alignment:
| Q |
34 |
taacacatacaaaacatgaaattggaccaaaaggtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacctgtg |
133 |
Q |
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| T |
41133339 |
taacacatacaaaacatgaaattggaccaaaatgtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacctgtg |
41133438 |
T |
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| Q |
134 |
taaactggctttgaagcaattgatcagatacgataacaccctcaaattttgacatcttggtaaatcaccaatacat |
209 |
Q |
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| T |
41133439 |
taaactggctttgaagcaattgatcagatacaataacaccctcaaattttgacatcttggtaaatcaccaatacat |
41133514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 41133573 - 41133668
Alignment:
| Q |
268 |
gtatttgcagataaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggaccaaatctagaagtggtttt |
363 |
Q |
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| T |
41133573 |
gtatttgcagaaaaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggaccaaatctagaagtggtttt |
41133668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 18575471 - 18575419
Alignment:
| Q |
98 |
ttacttttgatttaaggctgcgaagttcaacctgtgtaaactggctttgaagc |
150 |
Q |
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| T |
18575471 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagc |
18575419 |
T |
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