View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_low_9 (Length: 361)
Name: NF5026_low_9
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 20951372 - 20951043
Alignment:
| Q |
16 |
caaaactcatcaaggatcaattgaaaaccccaaaaagattcaatttactaacaacaatggttcaatatgcaagaaaattgtccaggtttgtttgataaat |
115 |
Q |
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| T |
20951372 |
caaaactcaacatggatcaattgataaccccaaaaagattcaatttactaacaacaatggttcaatatgcaagaaaattgtccaggtttgtttgataaat |
20951273 |
T |
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| Q |
116 |
atctaattagctcaataaaatattttattttgttaatta-tctctatgtaagatattgtagtttgtaacatctttgaatgtggctttgtgtagattgata |
214 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||| ||| ||| |||||||||||||||| |
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| T |
20951272 |
atctaattagctcaataaaaagttttatttagttaattactctctatgtaagatattgtaatttgtaacattttttaatttggatttgtgtagattgata |
20951173 |
T |
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| Q |
215 |
tgtttcaagtggatgaaagagggttttatgttaaaatattatgcaataagggagaaagggtggctgcttcattgtacaagtctcttgaatctttgaaaga |
314 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
20951172 |
tgtttcaagtagatgaaagagggttttatgttaaaatagtatgcaataagggagaaagggtggctgcttcattatacaagtctcttgaatctttgagaga |
20951073 |
T |
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| Q |
315 |
tttcaatgttcagaattcaaatttggccac |
344 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20951072 |
tttcaatgttcagaattcaaatttggccac |
20951043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 35474711 - 35474799
Alignment:
| Q |
214 |
atgtttcaagtggatgaaagagggttttatgttaaaatattatgcaataagggagaaagggtggctgcttcattgtacaagtctcttga |
302 |
Q |
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|||||||||||||| |||||||| | ||||| |||||||| |||||||| |||||| | || |||||||||||||||||| ||||||| |
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| T |
35474711 |
atgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtagctgcttcattgtacaaggctcttga |
35474799 |
T |
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