View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5027-Insertion-1 (Length: 997)

Name: NF5027-Insertion-1
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5027-Insertion-1
NF5027-Insertion-1
[»] chr7 (25 HSPs)
chr7 (8-212)||(16703937-16704141)
chr7 (8-212)||(17678173-17678377)
chr7 (539-631)||(16703302-16703394)
chr7 (539-631)||(17677538-17677630)
chr7 (447-510)||(25187120-25187183)
chr7 (448-510)||(45614032-45614094)
chr7 (447-510)||(19277146-19277209)
chr7 (447-510)||(21327027-21327090)
chr7 (447-510)||(45974788-45974851)
chr7 (385-425)||(16703584-16703624)
chr7 (385-425)||(17677820-17677860)
chr7 (447-510)||(4501114-4501177)
chr7 (458-510)||(22197842-22197894)
chr7 (458-510)||(22239927-22239979)
chr7 (447-510)||(982804-982867)
chr7 (447-490)||(38832177-38832220)
chr7 (447-504)||(38766185-38766242)
chr7 (390-450)||(16703407-16703467)
chr7 (390-450)||(17677643-17677703)
chr7 (446-510)||(19837073-19837136)
chr7 (458-510)||(32682003-32682055)
chr7 (474-510)||(48539283-48539319)
chr7 (455-504)||(2520918-2520967)
chr7 (456-485)||(12137250-12137279)
chr7 (447-504)||(45003086-45003143)
[»] chr5 (8 HSPs)
chr5 (40-164)||(507714-507838)
chr5 (447-510)||(2566284-2566347)
chr5 (447-510)||(42921553-42921616)
chr5 (458-510)||(15292225-15292277)
chr5 (455-489)||(27913506-27913540)
chr5 (447-504)||(13167099-13167156)
chr5 (467-504)||(32270005-32270042)
chr5 (447-504)||(33692241-33692298)
[»] scaffold0009 (1 HSPs)
scaffold0009 (447-510)||(102961-103024)
[»] chr1 (12 HSPs)
chr1 (447-510)||(7213098-7213161)
chr1 (447-510)||(868590-868653)
chr1 (447-510)||(21472858-21472921)
chr1 (447-509)||(22346751-22346813)
chr1 (447-510)||(19035334-19035397)
chr1 (447-510)||(24177700-24177763)
chr1 (447-510)||(28041316-28041379)
chr1 (447-510)||(1114057-1114120)
chr1 (447-504)||(5453956-5454013)
chr1 (447-510)||(28493520-28493583)
chr1 (447-504)||(30688418-30688475)
chr1 (447-502)||(20259986-20260041)
[»] chr3 (14 HSPs)
chr3 (447-510)||(32546650-32546713)
chr3 (447-510)||(44688-44751)
chr3 (447-510)||(52741701-52741764)
chr3 (460-510)||(4763994-4764044)
chr3 (450-510)||(53785564-53785624)
chr3 (447-504)||(26772619-26772676)
chr3 (458-510)||(39661385-39661437)
chr3 (459-505)||(21552524-21552570)
chr3 (447-504)||(4669852-4669909)
chr3 (447-504)||(38671069-38671126)
chr3 (447-504)||(39583418-39583475)
chr3 (458-504)||(49017828-49017874)
chr3 (447-488)||(26856951-26856992)
chr3 (467-504)||(44198628-44198665)
[»] scaffold0309 (1 HSPs)
scaffold0309 (447-510)||(5179-5242)
[»] chr8 (8 HSPs)
chr8 (447-510)||(18804468-18804531)
chr8 (447-510)||(22589525-22589588)
chr8 (448-510)||(18596789-18596851)
chr8 (471-510)||(500097-500136)
chr8 (458-510)||(24124883-24124935)
chr8 (447-499)||(38815160-38815212)
chr8 (447-485)||(37514101-37514139)
chr8 (461-510)||(1187395-1187444)
[»] chr4 (12 HSPs)
chr4 (447-510)||(30940921-30940984)
chr4 (447-510)||(40392743-40392806)
chr4 (447-504)||(3329857-3329914)
chr4 (447-504)||(23604951-23605008)
chr4 (447-504)||(31846964-31847021)
chr4 (447-504)||(50001115-50001172)
chr4 (453-505)||(27470993-27471045)
chr4 (447-499)||(39001263-39001315)
chr4 (467-510)||(600901-600944)
chr4 (468-510)||(16955315-16955357)
chr4 (446-491)||(16009241-16009285)
chr4 (455-492)||(50464493-50464530)
[»] chr2 (19 HSPs)
chr2 (447-510)||(3208433-3208496)
chr2 (447-510)||(41868096-41868159)
chr2 (447-510)||(4413255-4413318)
chr2 (447-510)||(17344493-17344556)
chr2 (447-510)||(18745143-18745206)
chr2 (447-510)||(20143134-20143197)
chr2 (447-510)||(42122672-42122735)
chr2 (447-500)||(9685604-9685657)
chr2 (447-510)||(13413206-13413269)
chr2 (447-510)||(15515336-15515399)
chr2 (446-504)||(10587143-10587201)
chr2 (457-510)||(4849680-4849733)
chr2 (447-510)||(2248497-2248560)
chr2 (449-504)||(2626038-2626093)
chr2 (468-509)||(32612372-32612414)
chr2 (465-510)||(5536704-5536748)
chr2 (447-504)||(30602350-30602407)
chr2 (451-504)||(38723985-38724038)
chr2 (447-504)||(41702133-41702190)
[»] chr6 (7 HSPs)
chr6 (453-510)||(45816-45873)
chr6 (447-510)||(28625786-28625849)
chr6 (448-510)||(2134994-2135056)
chr6 (447-504)||(34168782-34168839)
chr6 (447-490)||(17249494-17249537)
chr6 (448-504)||(7749342-7749398)
chr6 (448-504)||(33220901-33220957)
[»] scaffold0406 (1 HSPs)
scaffold0406 (447-503)||(6750-6806)
[»] scaffold0148 (1 HSPs)
scaffold0148 (458-507)||(33108-33157)
[»] scaffold0031 (1 HSPs)
scaffold0031 (447-488)||(49292-49333)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-99; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 16704141 - 16703937
Alignment:
Q  8 taaagtgtgagcaagagaaagtttttaagcttccatttgataaaaagaccaaagaggacaagtttttgcaattttcttctggtagttaccgttggggaac 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16704141 taaaatgtgagcaagagaaagtttttaagcttccatttgataaaaagaccaaagaggacaagttcttgcaattttcttctggtagttaccgttggggaac 16704042  T
Q  108 accttctgccacatgcgttcgacagttatcttggtcagaggcatttcatatccctttaaaggatgtattagattccaatgctcaaccaaatacacttagg 207  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16704041 accttctgccacatgtgttggacagttatcttggtcagaggcatttcatatccctttaaaggatgtattagaatccaatgctcaaccaaatacacttagg 16703942  T
Q  208 tatgt 212  Q
    |||||    
T  16703941 tatgt 16703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 17678377 - 17678173
Alignment:
Q  8 taaagtgtgagcaagagaaagtttttaagcttccatttgataaaaagaccaaagaggacaagtttttgcaattttcttctggtagttaccgttggggaac 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17678377 taaaatgtgagcaagagaaagtttttaagcttccatttgataaaaagaccaaagaggacaagttcttgcaattttcttctggtagttaccgttggggaac 17678278  T
Q  108 accttctgccacatgcgttcgacagttatcttggtcagaggcatttcatatccctttaaaggatgtattagattccaatgctcaaccaaatacacttagg 207  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17678277 accttctgccacatgtgttggacagttatcttggtcagaggcatttcatatccctttaaaggatgtattagaatccaatgctcaaccaaatacacttagg 17678178  T
Q  208 tatgt 212  Q
    |||||    
T  17678177 tatgt 17678173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 631
Target Start/End: Complemental strand, 16703394 - 16703302
Alignment:
Q  539 attttgattgcttatttttcttttaatagtgaaaataaaggtaaattgtgacaaacaaattttatttaataatacaacagctatggtttattg 631  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| | || | | |||||||||||||||||||||||||||||  |||||||    
T  16703394 attttgattgcttatttttcttttaatagtaaaaataatggtaaaatatgccgaccaaattttatttaataatacaacagctataatttattg 16703302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 631
Target Start/End: Complemental strand, 17677630 - 17677538
Alignment:
Q  539 attttgattgcttatttttcttttaatagtgaaaataaaggtaaattgtgacaaacaaattttatttaataatacaacagctatggtttattg 631  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| | || | | |||||||||||||||||||||||||||||  |||||||    
T  17677630 attttgattgcttatttttcttttaatagtaaaaataatggtaaaatatgccgaccaaattttatttaataatacaacagctataatttattg 17677538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 25187120 - 25187183
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  25187120 aaaaagatctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataatggttta 25187183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 45614032 - 45614094
Alignment:
Q  448 aaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||    
T  45614032 aaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaactgtaaataatggttta 45614094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 19277209 - 19277146
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| || ||||||||||||||||    
T  19277209 aaaaaggtctagcggcgcagcttattgcccgcctgccttctattcaaatgtaaataatggttta 19277146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 21327027 - 21327090
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||| ||||||| ||||||| | |||||||||||||| |||||||||||||||||||    
T  21327027 aaaaaggtctaacggcgcagcttgttgtctgcttgccttctattcaagtgtaaataatggttta 21327090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 45974788 - 45974851
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||| |||||| ||||||| ||||||| |||||||| |||||||||||||||||||    
T  45974788 aaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattcaagtgtaaataatggttta 45974851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 16703624 - 16703584
Alignment:
Q  385 aattttttatataaaaatgtctctaactttcacactaaatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16703624 aattttttatataaaaatgtctctaactttcacactaaatt 16703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 17677860 - 17677820
Alignment:
Q  385 aattttttatataaaaatgtctctaactttcacactaaatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17677860 aattttttatataaaaatgtctctaactttcacactaaatt 17677820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 4501177 - 4501114
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||| ||||| ||| ||| ||||||||||| |||| |||||||||||||||||||    
T  4501177 aaaaaggtctagcagcgcatcttattgtccgcttgccttatattcaagtgtaaataatggttta 4501114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 22197894 - 22197842
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||| ||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  22197894 gcggtgcaacttgttgcccgcttgtcttctattcaagagtaaataatggttta 22197842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 22239927 - 22239979
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||| ||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  22239927 gcggtgcaacttgttgcccgcttgtcttctattcaagagtaaataatggttta 22239979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 982867 - 982804
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||| | || ||||||||| | |||||||||||| |||| ||||||||||||||    
T  982867 aaaaaggtctagcgacacagcttgttgcctgtttgccttctattcaagtttaaataatggttta 982804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 38832220 - 38832177
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatt 490  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  38832220 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctatt 38832177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 38766242 - 38766185
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||| | |||||| ||||    
T  38766242 aaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 38766185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 16703467 - 16703407
Alignment:
Q  390 tttatataaaaatgtctctaactttcacactaaattagaagatgagaaaattaaagaaaaa 450  Q
    ||||||||||||||||||||||||||||| ||||||   |||||||| ||| | |||||||    
T  16703467 tttatataaaaatgtctctaactttcacagtaaatttagagatgagagaataagagaaaaa 16703407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 17677703 - 17677643
Alignment:
Q  390 tttatataaaaatgtctctaactttcacactaaattagaagatgagaaaattaaagaaaaa 450  Q
    ||||||||||||||||||||||||||||| ||||||   |||||||| ||| | |||||||    
T  17677703 tttatataaaaatgtctctaactttcacagtaaatttagagatgagagaataagagaaaaa 17677643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 446 - 510
Target Start/End: Complemental strand, 19837136 - 19837073
Alignment:
Q  446 aaaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||| |  || |||  |||||||||||||||||||| ||||||||||||||    
T  19837136 aaaaaaggtctagcggcgtag-ttattgttcgcttgccttctatttaagtttaaataatggttta 19837073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 32682003 - 32682055
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||| ||| ||| || ||||||||||||| |||||||||||||||||||    
T  32682003 gcggcgcagcttattgtccacttgccttctattcaagtgtaaataatggttta 32682055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 48539283 - 48539319
Alignment:
Q  474 cccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||| |||||||||||||||||||    
T  48539283 cccgcttgccttctattcaagtgtaaataatggttta 48539319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 455 - 504
Target Start/End: Original strand, 2520918 - 2520967
Alignment:
Q  455 ctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||| ||||||| |||||||||||||||| | |||||| ||||    
T  2520918 ctagcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2520967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 456 - 485
Target Start/End: Original strand, 12137250 - 12137279
Alignment:
Q  456 tagcggcgcaacttgttgcccgcttgcctt 485  Q
    ||||||||||||||||||||||||||||||    
T  12137250 tagcggcgcaacttgttgcccgcttgcctt 12137279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 45003086 - 45003143
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||| ||| ||| |||||||||| ||||| | |||||| ||||    
T  45003086 aaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaat 45003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 507838 - 507714
Alignment:
Q  40 ccatttgataaaaagaccaaagaggacaagtttttgcaattttcttctggtagttaccgttggggaacaccttctgccacatgcgttcgacagttatctt 139  Q
    ||||||||||| || || |||||||| ||||||||| | || ||| |||||||||||||||||||||||||  |||| |||||| ||  |||||||||||    
T  507838 ccatttgataagaaaacaaaagaggataagtttttgaacttctctgctggtagttaccgttggggaacaccaactgctacatgcattaaacagttatctt 507739  T
Q  140 ggtcagaggcatttcatatcccttt 164  Q
    ||||||| ||||||||||| |||||    
T  507738 ggtcagaagcatttcatattccttt 507714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 2566284 - 2566347
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||||||||||||| |||||||| | || || ||||||||||| ||||    
T  2566284 aaaaaggtctagcggcgcaacttgttgcccacttgccttattttcaattgtaaataatgattta 2566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 42921616 - 42921553
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| |||||||||||| |||||| ||| ||||||||||||| |||||||||||||| ||||    
T  42921616 aaaaagatctagcggcgcagcttgtttcccacttgccttctattcaagtgtaaataatgattta 42921553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 15292225 - 15292277
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||  ||||||||| ||||||||||||| |||| ||||||||||||||    
T  15292225 gcggcgcagtttgttgcccacttgccttctattcaagtataaataatggttta 15292277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 27913540 - 27913506
Alignment:
Q  455 ctagcggcgcaacttgttgcccgcttgccttctat 489  Q
    ||||||||||| |||||||||||||||||||||||    
T  27913540 ctagcggcgcagcttgttgcccgcttgccttctat 27913506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 13167099 - 13167156
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||| | |||||| ||||    
T  13167099 aaaaagatctagcggcgcagcttgttgcccacttgcctcctattcatgtgtaattaat 13167156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 32270005 - 32270042
Alignment:
Q  467 cttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  32270005 cttgttacccgcttgccttctattcaagtgtaaataat 32270042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 33692241 - 33692298
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||| |||||||||||| ||||||||| |||||||| ||||| | |||||| ||||    
T  33692241 aaaaagatctagcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaat 33692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 103024 - 102961
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  103024 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataatggttta 102961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 7213161 - 7213098
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7213161 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataatggttta 7213098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 868590 - 868653
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  868590 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataattgttta 868653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 21472921 - 21472858
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||    
T  21472921 aaaaaggtctagcggcgcaacttattgcccgcttgcattctattcaagtgtaaataatggttta 21472858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 22346813 - 22346751
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttt 509  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  22346813 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataatggttt 22346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 19035397 - 19035334
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||||    
T  19035397 aaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataatggttta 19035334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 24177700 - 24177763
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  24177700 aaaaaggtctagcggtgcagcttgttgcccgcttgtcttctattcaagtgtaaataatggttta 24177763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 28041316 - 28041379
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||    
T  28041316 aaaaaggtctagcggcggagcttgttgtccgcttgtcttctatttaagtgtaaataatggttta 28041379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 1114057 - 1114120
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||| |||| || ||||||||||||||| |||||||| |||||||||||||||||||    
T  1114057 aaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataatggttta 1114120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 5454013 - 5453956
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| | |||||| ||||    
T  5454013 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 28493520 - 28493583
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||  |||||| ||| ||| |||||||| |||||||||||||| ||||    
T  28493520 aaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataatgattta 28493583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 30688475 - 30688418
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| ||||    
T  30688475 aaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaat 30688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 20259986 - 20260041
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaata 502  Q
    |||||||||||||||||||  |||||||||  ||| |||||||| |||||||||||    
T  20259986 aaaaaggtctagcggcgcagtttgttgccccattgtcttctattcaagtgtaaata 20260041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 32546713 - 32546650
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  32546713 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataatggttta 32546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 44751 - 44688
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  44751 aaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaaataatggttta 44688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 52741701 - 52741764
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  52741701 aaaaaggtctagcgacgcaacttattgcccgctcgccttctattcaagtgtaaataatggttta 52741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 460 - 510
Target Start/End: Original strand, 4763994 - 4764044
Alignment:
Q  460 ggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4763994 ggcgcaacttgttgcccgcttgccttctattcaagtgtaaataatggttta 4764044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 450 - 510
Target Start/End: Complemental strand, 53785624 - 53785564
Alignment:
Q  450 aaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  53785624 aaggtccagcggcgtagcttgttgcccgcttgccttctattcaagtgtaaataatggttta 53785564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 26772676 - 26772619
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| | |||||| ||||    
T  26772676 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 26772619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 39661385 - 39661437
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||| |||||||||||| ||| ||||||| |||||||||||||||||||    
T  39661385 gcggcgcagcttgttgcccgcgtgctttctattcaagtgtaaataatggttta 39661437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 21552570 - 21552524
Alignment:
Q  459 cggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatg 505  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||    
T  21552570 cggcgcaacttgttgcccgtttaccttctattcaagtgtaaataatg 21552524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 4669852 - 4669909
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||||| | |||||||| |||||||||||||||||||  ||| |||||||||||||    
T  4669852 aaaaaggtttggcggcgcagcttgttgcccgcttgcctttgattaaagtgtaaataat 4669909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 38671069 - 38671126
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||| ||||||||||||| ||||||| |||||| ||| ||||||| |||||||||||    
T  38671069 aaaaaagtctagcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataat 38671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 39583418 - 39583475
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||||||||||| | |||||| ||||||| | |||||| ||||    
T  39583418 aaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaagtaat 39583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 49017874 - 49017828
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||| ||| ||||||| |||||||||||||||| |||||||||||||    
T  49017874 gcggtgcagcttgttgtccgcttgccttctattcaagtgtaaataat 49017828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 26856951 - 26856992
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttcta 488  Q
    ||||||| ||||||||||| |||||||| |||||||||||||    
T  26856951 aaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 26856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 504
Target Start/End: Complemental strand, 44198665 - 44198628
Alignment:
Q  467 cttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  44198665 cttgttgtccgcttgccttctattcaagtgtaaataat 44198628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 5242 - 5179
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  5242 aaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataatggttta 5179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 18804531 - 18804468
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  18804531 aaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaaataatggttta 18804468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 22589525 - 22589588
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  22589525 aaaaaggtctagcggcgcagcttgttgcccgcttgccttttattcaagtgtaaataatggttta 22589588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 18596789 - 18596851
Alignment:
Q  448 aaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||    
T  18596789 aaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataatggttta 18596851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 471 - 510
Target Start/End: Complemental strand, 500136 - 500097
Alignment:
Q  471 ttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  500136 ttgcccgcttgccttctattcaagtgtaaataatggttta 500097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 24124935 - 24124883
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||| ||| ||  |||||||||||||||| |||||||||||||||||||    
T  24124935 gcggcgcagcttttttgccgcttgccttctattcaagtgtaaataatggttta 24124883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 38815212 - 38815160
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaa 499  Q
    |||||||  |||||||||| |||||||||||||||||||||||| | ||||||    
T  38815212 aaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatgtgtaa 38815160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 37514139 - 37514101
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgcctt 485  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  37514139 aaaaaggtctaacggcgcagcttgttgcccgcttgcctt 37514101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 1187395 - 1187444
Alignment:
Q  461 gcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||| ||||||| | |||||||||||||| ||||||||||||| |||||    
T  1187395 gcgcagcttgttgtctgcttgccttctattcaagtgtaaataattgttta 1187444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 30940921 - 30940984
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30940921 aaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaaataatggttta 30940984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 40392743 - 40392806
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  40392743 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataatggttta 40392806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 3329914 - 3329857
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| | |||||| ||||    
T  3329914 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaat 3329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 23605008 - 23604951
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||| | |||||||||||    
T  23605008 aaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataat 23604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 31847021 - 31846964
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| | |||||| ||||    
T  31847021 aaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtgtaagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 50001115 - 50001172
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| | |||||| ||||    
T  50001115 aaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 27471045 - 27470993
Alignment:
Q  453 gtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatg 505  Q
    ||||||||||||| ||||||||| | ||||||||| || ||||||||||||||    
T  27471045 gtctagcggcgcagcttgttgcctgattgccttctgttcaagtgtaaataatg 27470993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 39001315 - 39001263
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaa 499  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| | ||||||    
T  39001315 aaaaaggtctagcggcgcagtttgttgcccgcttgcctcctattcatgtgtaa 39001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 600901 - 600944
Alignment:
Q  467 cttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  600901 cttgttgtccgcttgccttctattcaagtgtaaataattgttta 600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 16955357 - 16955315
Alignment:
Q  468 ttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| |||||||||||||| | |||||||||||||||||||    
T  16955357 ttgttgtccgcttgccttctactcaagtgtaaataatggttta 16955315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 16009285 - 16009241
Alignment:
Q  446 aaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattt 491  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||||    
T  16009285 aaaaaaggt-tagcggcgcagcttgttgcctgcttgccttctattt 16009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 50464493 - 50464530
Alignment:
Q  455 ctagcggcgcaacttgttgcccgcttgccttctattta 492  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  50464493 ctagcggcgcagcttgttgtccgcttgccttctattta 50464530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 3208433 - 3208496
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  3208433 aaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataatggttta 3208496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 41868096 - 41868159
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  41868096 aaaaagatctagcggcgcaacttgttgcccgcttgctttctattcaagtgtaaataatggttta 41868159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 4413255 - 4413318
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||    
T  4413255 aaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaagtgtaaataattgttta 4413318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 17344556 - 17344493
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||| ||||    
T  17344556 aaaaaggtctatcggcgcagcttgttgccggcttgccttctattcaagtgtaaataatgattta 17344493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 18745143 - 18745206
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||| |||||||||||||||||||    
T  18745143 aaaaaggtctagcggcgcagcttattgctcgcttgtcttctattcaagtgtaaataatggttta 18745206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 20143134 - 20143197
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||||||||    
T  20143134 aaaaaggtctagcggcgcaacttgttgtctgtttgccttctattcaaatgtaaataatggttta 20143197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 42122735 - 42122672
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||| ||||||||||||| ||| |||  ||||||||||||||| |||||||||||||||||||    
T  42122735 aaaaaagtctagcggcgcagcttattgttcgcttgccttctattcaagtgtaaataatggttta 42122672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 9685604 - 9685657
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaa 500  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| || ||||||    
T  9685604 aaaaaggtctagcggcgcagcttgttgcccgcttgccttatattcaaatgtaaa 9685657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 13413269 - 13413206
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||| ||| |||| || ||||||| ||||||| |||||||| |||||||||||||||||||    
T  13413269 aaaaaggcctaacggctcagcttgttgtccgcttgtcttctattcaagtgtaaataatggttta 13413206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 15515336 - 15515399
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||| |||||||||||||  |||||||| | |||||||||| | |||||||||||||||||||    
T  15515336 aaaaaagtctagcggcgcagtttgttgcctgtttgccttctactcaagtgtaaataatggttta 15515399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 10587143 - 10587201
Alignment:
Q  446 aaaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| | |||||| ||||    
T  10587143 aaaaaaggtctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaat 10587201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 4849733 - 4849680
Alignment:
Q  457 agcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||| |||||||||||||| ||| ||||||||| |||||||||||||| ||||    
T  4849733 agcggtgcaacttgttgcccacttaccttctattcaagtgtaaataatgattta 4849680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 2248560 - 2248497
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| || |||||| |||  |||| |||||||||||||| || |||||||||||||||||||    
T  2248560 aaaaagatccagcggcacaatctgttacccgcttgccttctgttcaagtgtaaataatggttta 2248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 2626038 - 2626093
Alignment:
Q  449 aaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||| ||||||| ||||||| |||||||||||||||| | |||||| ||||    
T  2626038 aaaggtctaacggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 32612372 - 32612414
Alignment:
Q  468 ttgttgcccgcttgccttcta-tttaagtgtaaataatggttt 509  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  32612372 ttgttgcccgcttgccttctattttaagtgtaaataatagttt 32612414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 5536748 - 5536704
Alignment:
Q  465 aacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  5536748 aacttgttgcctgcttgc-ttctattcaagtgtaaataatggttta 5536704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 30602407 - 30602350
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||| ||||| ||||| |||||||||||| ||||||||||| | |||||| ||||    
T  30602407 aaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaat 30602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 38723985 - 38724038
Alignment:
Q  451 aggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||| |||||| ||||    
T  38723985 aggtctagcggtgcagcttgttgctcgcttgcctcctatttatgtgtaagtaat 38724038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 41702190 - 41702133
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||| |||| |||||| |||||||||| ||||||||||||| | |||||| ||||    
T  41702190 aaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaat 41702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 453 - 510
Target Start/End: Original strand, 45816 - 45873
Alignment:
Q  453 gtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  45816 gtctagcggcgcagcttgttgcccgcttgcctcctattcaagtgtaaataatggttta 45873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 28625849 - 28625786
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||||| |||||||||||| ||| || |||| |||||||||||||||||||||||||| |||||    
T  28625849 aaaaagatctagcggcgcagcttattacccgtttgccttctatttaagtgtaaataatagttta 28625786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 2134994 - 2135056
Alignment:
Q  448 aaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggttta 510  Q
    |||| ||||||||||||| |||||| || |||||||||||||| || ||||||||||||||||    
T  2134994 aaaaagtctagcggcgcagcttgttacctgcttgccttctattcaattgtaaataatggttta 2135056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 34168839 - 34168782
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| | |||||| ||||    
T  34168839 aaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaattaat 34168782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 17249494 - 17249537
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatt 490  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  17249494 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctatt 17249537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 7749398 - 7749342
Alignment:
Q  448 aaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| | |||||| ||||    
T  7749398 aaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaat 7749342  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 33220901 - 33220957
Alignment:
Q  448 aaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataat 504  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| | |||||| ||||    
T  33220901 aaaaggtctagcggcgcagcttgttggccgcttgcctcctattcatgtgtaagtaat 33220957  T

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Target: scaffold0406 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 447 - 503
Target Start/End: Complemental strand, 6806 - 6750
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataa 503  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  6806 aaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaaataa 6750  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 33157 - 33108
Alignment:
Q  458 gcggcgcaacttgttgcccgcttgccttctatttaagtgtaaataatggt 507  Q
    |||| ||| ||||||||| |||||||||||||| ||||||||||||||||    
T  33157 gcggtgcagcttgttgcctgcttgccttctattcaagtgtaaataatggt 33108  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 488
Target Start/End: Complemental strand, 49333 - 49292
Alignment:
Q  447 aaaaaggtctagcggcgcaacttgttgcccgcttgccttcta 488  Q
    |||| |||||||||||||||||||||||  ||||||||||||    
T  49333 aaaacggtctagcggcgcaacttgttgctagcttgccttcta 49292  T

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