View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5027-Insertion-2 (Length: 792)
Name: NF5027-Insertion-2
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-2 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 42635053 - 42634265
Alignment:
| Q |
8 |
caaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctggtccta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
42635053 |
caaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctgattcta |
42634954 |
T |
|
| Q |
108 |
gttgtgcaggaaagaacttctactcaagagctgcttttcttgatgccctcggttcttataatcagtttggcagggctggttctgtagatgactctaaacg |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
42634953 |
gttgtgcaggaaagaacttctattcaagagctgtttttcttgatgccctcggttcttataatcagtttggtagggttggttctgtagatgactccaaacg |
42634854 |
T |
|
| Q |
208 |
cgaaatcgcagctgcttttgcacatttcactcatgaaactggacgtaagtattataactcatttaaagaatcaatcactatttagttttcatgcatattg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42634853 |
cgaaatcgcagctgcttttgcacatttcactcatgaaactggacgtaagtattataactcatttaaagaatcaatcacaatttagttttcatgcatattg |
42634754 |
T |
|
| Q |
308 |
attactaaaattaacaaaattttagaatggcatttaaaatttaatattttctaccatgccagtttcaagacaatttcagtgattaaattgattgaactaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634753 |
attactaaaattaacaaaattttagaatggtatttaaaatttaatattttctaccatgccagtttcaagacaatttcagtgattaaattgattgaactaa |
42634654 |
T |
|
| Q |
408 |
gaactaatatgatcaatggttattattttcaataatcatttgagaatttagttaatnnnnnnnntatatttgtcaaaaacctttacaatttcaatgaact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42634653 |
gaactaatatgatcaatggttattattttcaataatcatttgagaatttagttaataaaaaaaatatatttgtcaaaaacctttacaatttcaattaact |
42634554 |
T |
|
| Q |
508 |
tttattagcatttcagcttggtcaacagttgtttgagactaaccggaccacatttagttcaattcttgttctagcgtataagctatatggtttggctagg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634553 |
tttattagcatttcagcttggtcaacagttgtttgagactaaccagacctcatttagttcaattcttgttctagcgtataagctatatggtttggctagg |
42634454 |
T |
|
| Q |
608 |
tttaattttgtg----cacacatacatacatctataagactaataactaaatttcacgtttcttgatctccattttctcagtttttcgacatacataacg |
703 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634453 |
tttaattttgtgcatacatacatacatacatctataagactaataactaaatttcacgtttcttgatctccattttctcagtttttcgacatacataacg |
42634354 |
T |
|
| Q |
704 |
tgtgaaattaccattgatgcagatttttgctatatagaagagaagggatggtgcatcaacggactactgcgatgagagc-acacagagta |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
42634353 |
tgtgaaattaccattgatgcagatttttgctatatagaagagaa-ggatggtgcatcaaaggactactgcgatgaaagcaacacagagta |
42634265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 42640053 - 42639825
Alignment:
| Q |
32 |
cctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctggtcctagttgtgcaggaaagaacttctact |
131 |
Q |
| |
|
|||| |||||||| || ||||||||||| |||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
42640053 |
cctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaacttctaca |
42639954 |
T |
|
| Q |
132 |
caagagctgcttttcttgatgccctcggttcttataatcagtttggcagggctggttctgtagatgactctaaacgcgaaatcgcagctgcttttgcaca |
231 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||| ||| |||| ||| | |||||||| ||||| || | || ||||||||||| || |
|
|
| T |
42639953 |
caagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatctttggatgactccaaacgtgaggttgctgctgcttttgctca |
42639854 |
T |
|
| Q |
232 |
tttcactcatgaaactggacgtaagtatt |
260 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
42639853 |
tttcacacatgaaactggacgtaagtatt |
42639825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University