View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5027-Insertion-3 (Length: 716)

Name: NF5027-Insertion-3
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5027-Insertion-3
NF5027-Insertion-3
[»] chr3 (1 HSPs)
chr3 (8-716)||(40029717-40030416)


Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 40030416 - 40029717
Alignment:
Q  8 aaatttcctcaacaaagtcttctattttagaatcatcatctccttctcttcctcaaccattgcagttgcaagaggtaataatcttaattttcttcttcct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030416 aaatttcctcaacaaagtcttctattttagaatcatcatctccttctcttcctcaaccattgcagttgcaagaggtaataatcttaattttcttcttcct 40030317  T
Q  108 catcctcaaaagttttcaattaagatagttgaactcgtgttgtgtacaacatttaattaattagttttgtccagnnnnnnnnnnggtatatttgctagct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  40030316 catcctcaaaagttttcaattaagatagttgaactcgtgttgtgtacaacatttaattaattagttttgtccagaaaaaaa---ggtatatttgctagct 40030220  T
Q  208 tcaaaaacaagtaaagaagaaaatttgaacatgcaaaattatagtatgtgcttatcttgtttgcaaaccccatagaattaataaagctaagctcaatttt 307  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030219 tcaaaaacaagtaaagaagaaaatttgagtatgcaaaattctagtatgtgcttatcttgtttgcaaaccccatagaattaataaagctaagctcaatttt 40030120  T
Q  308 cataattaaatatcatcaacacatccattttatcatgttgtgttgactaagctactttttctttcttaattaaatattcattcagttaggacttaagaga 407  Q
    |||||||||||||||   ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030119 cataattaaatatca---acacatccattttatcatgttg-----actaagctactttttctttcttaattaaatattcattcagttaggacttaagaga 40030028  T
Q  408 cacgcattctgcgtttatttcttctaatttctcccttacattgttgaaattgttagcagtattatgctgagtggggatattgaactttggacctccttat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030027 cacgcattctgcgtttatttcttctaatttctcccttacattgttgaaattgttagcagtattatgctgagtggggatattgaactttggacctccttat 40029928  T
Q  508 caaattactttcatttcacatatataattgattgataagggtacgtgttatatatggatatggagatttctttctcctaaacttaccttcattaacaaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40029927 caaattactttcatttcacatatataattgattgataagggtacgtgttatatatggatatggagatttctttctcccaaacttaccttcattaacaaca 40029828  T
Q  608 tatatagttcctctt--nnnnnnnnnngttaggaaggaaaatctcatcaacaaataattaaaataaagcaactttatatggagttgccaatttctatttc 705  Q
    |||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40029827 tatatagttcctcttaaaaaaaaaaaagttaggaaggaaaatctcatcaacaaataattaaaataaagcaactttatatggagttgccaatttctatttc 40029728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University