View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5027-Insertion-4 (Length: 636)
Name: NF5027-Insertion-4
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-4 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Complemental strand, 14305433 - 14304805
Alignment:
| Q |
8 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305433 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
14305334 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305333 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
14305234 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14305233 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttcc |
14305134 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305133 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgtttcggctattgttcgattgataactgtccgtgaag |
14305034 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305033 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
14304934 |
T |
|
| Q |
508 |
tattcatgtgataagaatatccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14304933 |
tattcatgtgataagaatatccgatgtagtagccacatatccatcgatttcaatcgatagaactttgagtccttatgcccattcttcatttttgtccaaa |
14304834 |
T |
|
| Q |
608 |
acagggtggttttggctgaatcctttact |
636 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14304833 |
acagggtggttttggctgaatcctttact |
14304805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Complemental strand, 14321824 - 14321196
Alignment:
| Q |
8 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
14321824 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaggacaaagattctgactatagaa |
14321725 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14321724 |
tcaccttttggttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataaactttc |
14321625 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14321624 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttcc |
14321525 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
14321524 |
aaacaccctttatcactaagaatctattggatagcaaactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataactgtcggtgaag |
14321425 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
14321424 |
aaaagttggagcttagtttgaaaatagatgatatattctcattggttaatcttccattatctgtgttcttttttgtgatatccgtaaaagggtcatcagg |
14321325 |
T |
|
| Q |
508 |
tattcatgtgataagaatatccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
14321324 |
tattcacgtgataagaatatccgatgtagtagcaacatatcggtcaatttcgaccgatagaactttgagtccttatgcttgttcgtcatttttgtctaaa |
14321225 |
T |
|
| Q |
608 |
acagggtggttttggctgaatcctttact |
636 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
|
|
| T |
14321224 |
acagggtggttttggatgaaccctttact |
14321196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 633
Target Start/End: Complemental strand, 14283671 - 14283050
Alignment:
| Q |
12 |
cagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaatcac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
14283671 |
cagctcaaaaactctattcaagattctattcaagttccaactctacctccttaatcacaaaaccacttctgcaaaagaacgattctgactatagaatcac |
14283572 |
T |
|
| Q |
112 |
ctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttca |
211 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283571 |
cttttggttcaaactagcctttttgttaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttca |
14283472 |
T |
|
| Q |
212 |
tggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||| || |
|
|
| T |
14283471 |
tggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacac |
14283372 |
T |
|
| Q |
312 |
accctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaa |
411 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| |
|
|
| T |
14283371 |
accctttaccacttagaatttattgggcagcaaactttgtgattgcttctttgttcactgcttcagctattgttcgaatgataaccgttggtgaaacaaa |
14283272 |
T |
|
| Q |
412 |
gttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtatt |
511 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283271 |
gttggagcttaatttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtatt |
14283172 |
T |
|
| Q |
512 |
catgtgataagaatatccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacag |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14283171 |
catgtgataagaatatccgatgtagtagcaacatatccatcagtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacag |
14283072 |
T |
|
| Q |
612 |
ggtggttttggctgaatccttt |
633 |
Q |
| |
|
|||| |||| |||| ||||| |
|
|
| T |
14283071 |
tttggtattggatgaacccttt |
14283050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 36 - 633
Target Start/End: Complemental strand, 25886478 - 25885881
Alignment:
| Q |
36 |
tctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaatcacctttttgttcaaactagccttttt |
135 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | |||| ||| |||||| ||| |||| || |
|
|
| T |
25886478 |
tctattcaagagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctaaccttgtt |
25886379 |
T |
|
| Q |
136 |
ggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacttttt |
235 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25886378 |
ggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacctttt |
25886279 |
T |
|
| Q |
236 |
cggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctatt |
335 |
Q |
| |
|
||||||||||||||| || |||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25886278 |
cggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctatt |
25886179 |
T |
|
| Q |
336 |
ggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaataga |
435 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| || | |||| || |||||||| ||||||||||||||||| |
|
|
| T |
25886178 |
ggatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaataga |
25886079 |
T |
|
| Q |
436 |
tgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccgatgta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25886078 |
tgacatattctcattggttaatcttccattatctttgttcttttttgtcatatccattagagggtcatcagggattcatgtgataagaatatccgatgta |
25885979 |
T |
|
| Q |
536 |
gtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatccttt |
633 |
Q |
| |
|
||||| |||||| ||||| || ||| ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
25885978 |
gtagcgacatatacatcggttccaactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatgaacccttt |
25885881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 633
Target Start/End: Complemental strand, 44350350 - 44349725
Alignment:
| Q |
8 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
||||||||||| ||||||||||||||| || | |||| | |||| || ||| ||||||||||||||||||||| |||||||||| ||| |||||| | |
|
|
| T |
44350350 |
tttgcagctcacaaactctattcaagaatcaactcaaattccaacaataactcttcaatcacaaaaccacttctgaaagagaaagactctaactatagag |
44350251 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
|||| ||| |||||||||| |||| |||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44350250 |
tcactctttggttcaaactacccttgttggtaactaccattttggctataacttaaactgttctaggaatattggcttttactcaaaccaataacctttc |
44350151 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
44350150 |
ttcatggaaacaaatagaagcaccttttcggttgtttcaagctgtagtcaacatagtaatagtgattctaatgttacacgaggaaaagttcaaatcttcc |
44350051 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| | | |||| | |
|
|
| T |
44350050 |
aaacaccctttatccctaagaatctattggatagtaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaataccagtgagg |
44349951 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||| |
|
|
| T |
44349950 |
aaaaaatggaacttagtttgagaatagatgatatattctcattggttaatcttccattatctgcgttcttttttgtcatatccattagagggtcatcagg |
44349851 |
T |
|
| Q |
508 |
tattcatgtgataagaatatccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |||| || | | ||| ||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44349850 |
gattcttgtgataagaatatccgatgtagtagcgacatatacatcagttccgactgatggaaatttgagtccttatgctggttcttcatttttgtccaaa |
44349751 |
T |
|
| Q |
608 |
acagggtggttttggctgaatccttt |
633 |
Q |
| |
|
|||| ||||||||| |||| ||||| |
|
|
| T |
44349750 |
acagtttggttttggatgaacccttt |
44349725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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