View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5027-Insertion-5 (Length: 494)
Name: NF5027-Insertion-5
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 162 - 494
Target Start/End: Original strand, 8897819 - 8898150
Alignment:
| Q |
162 |
tgttcgataactcagaagaactatatgcggaactctccttttataggtaaaattcgcaacc--tccggagaaacttggggaacaagatctccgcagatca |
259 |
Q |
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| T |
8897819 |
tgttcgataactcagaagaactat--gcg-aactctccttttatagggaaaattcgcaaccactccggagaaacttggggaacaagatctccgcagatca |
8897915 |
T |
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| Q |
260 |
aatcaagtaataaactgattagataagcttgggcaagaagttggagcgcgcaagcggattagatcggattgttagttggatcagatatacacgaaacata |
359 |
Q |
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| T |
8897916 |
aatcaagcaataaacggattaaataagcttgggcaagaagttggagcgcgcaagcggattagatcggatagttagttggatcaaatatacacgaaacata |
8898015 |
T |
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| Q |
360 |
ttccttaagaaagcattatcacgtaataataaaattaattaattaataacattttcgggtcataaaaaatatatatcttttagctcaagtttaaacccaa |
459 |
Q |
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| T |
8898016 |
ttccttaagaaagcactatcatgtaataataaaattaattaattaataacatttttgggtcataaaaaatatatatcttttagctcaagctcaagcccaa |
8898115 |
T |
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| Q |
460 |
gcccgacggtggtggcagcgacgtcgctcgtgata |
494 |
Q |
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| T |
8898116 |
gcccgacggtggtggcagcgacgtcgatcgtgata |
8898150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 8897665 - 8897736
Alignment:
| Q |
7 |
aaattatacaagaaagagtcaccgccttcaaaaaatcgtttgtatgtataccacttgaaactaaagggatat |
78 |
Q |
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| T |
8897665 |
aaattatacaagaaagagttaccgcctccaaaaaatcgtttgtatgtataccgcttgaaactaaagggatat |
8897736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 31604400 - 31604359
Alignment:
| Q |
330 |
gttagttggatcagatatacacgaaacatattccttaagaaa |
371 |
Q |
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| T |
31604400 |
gttagttggataacatatacacgaaacatattctttaagaaa |
31604359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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