View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5027-Insertion-6 (Length: 345)
Name: NF5027-Insertion-6
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 49807142 - 49806808
Alignment:
| Q |
8 |
ctcggagttgaagaaatttctcagaaaaattcagaagaaagacaaaaacttcggtggcttgaaaactcgccgggaaaacgtaaagtgtttcttttgtttt |
107 |
Q |
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| T |
49807142 |
ctcggagttgaagaaatttctcagcaaaattcagaagaaagacaaaaacttcggtggcttgaaaactcgccgggaaaacgtaaagtgtttcttttgtttt |
49807043 |
T |
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| Q |
108 |
cgtgtgcgtgtttatatacacgatggcgcttttaacgttcggcttaggtttctaatctctgtgctaagatgcgcattggggtgnnnnnnnatgaaacaat |
207 |
Q |
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| T |
49807042 |
cgtgtgcgtgtttatatacacgatggcgctattaacgttcggcttaggtttctaatctctgtgctaagatgcgcattggggtg-ttttttatgaagcaat |
49806944 |
T |
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| Q |
208 |
agtcattttagtccctcgattgtgtggcgattaaccataataatctttcaactcgaaatttcaaaatattttttgattgtgcaattgtgttggtcaaaac |
307 |
Q |
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| T |
49806943 |
agtcatttttgtccctcgattgtgtggtgattaaccataataatctttcaactcgaaatttcaaaatatttttt-attatgc-gttgtgttggtcaaaac |
49806846 |
T |
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| Q |
308 |
aatttttaatgttaaaatatttttggactattgttacc |
345 |
Q |
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| T |
49806845 |
aatttctaatgttaaaatatttttggacaattgttacc |
49806808 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 22235531 - 22235486
Alignment:
| Q |
260 |
tcgaaatttcaaaatattttttgattgtgcaattgtgttggtcaaaa |
306 |
Q |
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| T |
22235531 |
tcgaaatttcaaaataatttttgattgtgcaatt-tgttagtcaaaa |
22235486 |
T |
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