View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5027-Insertion-8 (Length: 210)
Name: NF5027-Insertion-8
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 31247073 - 31247277
Alignment:
| Q |
6 |
caattggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaatt |
105 |
Q |
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| T |
31247073 |
caattggaaggctacattgcttagaaattctaaatgtgggaggaaacaattttgttactctaccttctagcatcaaggaactttccaaacttagacagtt |
31247172 |
T |
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| Q |
106 |
gaacttggagcattgtaagcagctgaaatatttgcctgagctcccatcaaatactgtcttgccagtaagaaaaacattttttggtagatatgtagctgga |
205 |
Q |
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| T |
31247173 |
gaacttggagcattgtaaacagctgaaatatttgcctgagctctcatcaaatactgtcttgccagtaggaaaaacattttttggtagatatgtagctgga |
31247272 |
T |
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| Q |
206 |
ttata |
210 |
Q |
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||||| |
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| T |
31247273 |
ttata |
31247277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 31212662 - 31212788
Alignment:
| Q |
6 |
caattggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaatt |
105 |
Q |
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||||||| | ||| |||||||||||||| ||||| || |||| ||||||||||| ||| ||||||||||||| || ||||||||||||||||| |||| |
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| T |
31212662 |
caattgggttgttgcattgcttagaaatgctaaagttaggggggaacaattttgtgacactaccttctagcatgaaataactttccaaacttagagaatt |
31212761 |
T |
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| Q |
106 |
gaacttggagcattgtaagcagctgaa |
132 |
Q |
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| T |
31212762 |
gaacttggagcactgtaagcagctgaa |
31212788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 13614845 - 13614990
Alignment:
| Q |
8 |
attggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaattga |
107 |
Q |
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| T |
13614845 |
attgggtggttacactgcttagaaatcctaaggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaaattga |
13614944 |
T |
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| Q |
108 |
acttggagcattgtaagcagctgaaatatttgcctgagctcccatc |
153 |
Q |
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| T |
13614945 |
acttgaatcactgtaagcaactgaaatatttaccggaactcccatc |
13614990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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