View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5027-Insertion-9 (Length: 52)
Name: NF5027-Insertion-9
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 46; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-18
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 37188781 - 37188826
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaa |
52 |
Q |
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| T |
37188781 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaa |
37188826 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 37893683 - 37893727
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatca |
51 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893683 |
aatttgaagctggaatcttatatattaagcttccaaaactcatca |
37893727 |
T |
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