View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5027_high_1 (Length: 555)
Name: NF5027_high_1
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 349 - 545
Target Start/End: Original strand, 6148916 - 6149112
Alignment:
| Q |
349 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgcgaagttaaagccctaaaaatattttgtctatttaaatttcct |
448 |
Q |
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| T |
6148916 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgtgaagttaaagccctaaaaatattttgtctatttaaatttcct |
6149015 |
T |
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| Q |
449 |
ttttacatattttctttccaagtagaacgagataagaacaaaggtacgagttaagttaggcaaacccttaattaaaataaattttgttaaagtatta |
545 |
Q |
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| T |
6149016 |
ttttacattttttctttctaagtagaacgagataagaacaaaggtacgagttaagttagacaaacccttaattaaaataaattttgttaaagtatta |
6149112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 6148785 - 6148870
Alignment:
| Q |
218 |
cttaacagagtccaaccttagagatggattggctttggcttttgggttgtggtgtatatgtgtatgtagaagtgaatacttttgtc |
303 |
Q |
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| T |
6148785 |
cttaacagagtccaaccttagagatggattggctttggcttttgggttgtggtgtatatgtgtatgtagaagtgaatacttttgtc |
6148870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 6148593 - 6148709
Alignment:
| Q |
19 |
atcaatatcatatgtatatggcatctgttcacaacatatcacatatatatgacttggatgannnnnnnnnnnnnnnnnctaatagtaattaatcgaaaga |
118 |
Q |
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| T |
6148593 |
atcaatatcatatgtatatggcatctgttcacaacatatcacatatatatgacttagatga-------atttttttttctaatagtaattaatcgaaaga |
6148685 |
T |
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| Q |
119 |
aaatacaacatatcaactgaacag |
142 |
Q |
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| T |
6148686 |
aaatacaacatatcaactgaacag |
6148709 |
T |
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