View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5027_low_2 (Length: 401)
Name: NF5027_low_2
Description: NF5027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5027_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 47301821 - 47301449
Alignment:
| Q |
11 |
cacagataataatcctgtcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccaccgggtgctgaagg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301821 |
cacaaataataatcctgtcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccaccgggtgctgaagg |
47301722 |
T |
|
| Q |
111 |
atacacaaaattccaaacagaatagtgcaaatctttatcagaactcttaagtttaacactttctaatccaacagggtatgaactatagaaataaggctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301721 |
atacacaaaattccaaacagaatagtggaaatctttatcagaactcttaagtttaacactttctaatccaacagggtatgaactatagaaataaggctgt |
47301622 |
T |
|
| Q |
211 |
tgtaaaatagctcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301621 |
tgtaaaatagctcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccac |
47301522 |
T |
|
| Q |
311 |
caatgaaaactctgttgaaatcaccgtggttaattaaccatgattccgggttaacggggtttggggcagaatt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301521 |
caatgaaaactctgttgaaatcaccgtggttaattaaccatgattccgggttaacggggtttggggcagaatt |
47301449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 372
Target Start/End: Complemental strand, 47304696 - 47304358
Alignment:
| Q |
22 |
atcctgtcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaat |
121 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
47304696 |
atcctatcacaaccaagtccatccaaactaggtgcccctatgcccacaggattaaccataggattatcaattccaccaggtgctgatggatacacaaaat |
47304597 |
T |
|
| Q |
122 |
tccaaacagaatagtgcaaatctttatcagaactcttaagtttaacactttctaatccaacagggtatgaactatagaaataaggctgttgtaaaatagc |
221 |
Q |
| |
|
|||||| || ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
47304596 |
tccaaaggtaagagtagaaatcttta------------agtttaacattttccaatccaacagggtatgaactatagaataaagggtgttgtaaaatagc |
47304509 |
T |
|
| Q |
222 |
tcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatgaaaact |
321 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47304508 |
tcctaataatttaacatcattgggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactagcaccaccaatgaaaact |
47304409 |
T |
|
| Q |
322 |
ctgttgaaatcaccgtggttaattaaccatgattccgggttaacggggttt |
372 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
47304408 |
ctgttgaaatcaccatggttaattaaccacggttccgggttaactgggttt |
47304358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 47333319 - 47333263
Alignment:
| Q |
69 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattcca |
125 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
47333319 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattcca |
47333263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 17841947 - 17841619
Alignment:
| Q |
22 |
atcctgtcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaat |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17841947 |
atcctatcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaat |
17841848 |
T |
|
| Q |
122 |
tccaaacagaatagtgcaaatctttatcagaactcttaagtttaacactttctaatccaacagggtatgaactatagaaataaggctgttgtaaaatagc |
221 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17841847 |
tccaaacagaagagtacaaatctttatcagaactcttaaatttaacactttccaatccaacagggtatgaactaaagaacaaaggctgttgtaaaatagc |
17841748 |
T |
|
| Q |
222 |
tcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatgaaaact |
321 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
17841747 |
tcctactaatttaacatcattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagaactaggaccaccaatgaaaact |
17841648 |
T |
|
| Q |
322 |
ctgttgaaatcaccgtggttaattaacca |
350 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
17841647 |
ctgttgaaatcaccatggttaattaacca |
17841619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 663475 - 663390
Alignment:
| Q |
259 |
ccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatgaaaactctgttgaaatcaccgtggttaat |
344 |
Q |
| |
|
|||||||||||||| ||||| ||||| || || ||||| |||||||||||||| |||||| ||||||||||||| || ||||| |
|
|
| T |
663475 |
ccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatcaccatgattaat |
663390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 673216 - 673174
Alignment:
| Q |
289 |
ttaccaccagcactatcaccaccaatgaaaactctgttgaaat |
331 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
673216 |
ttaccaccactactatcaccaccaatgaaaactctattgaaat |
673174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 15234048 - 15234151
Alignment:
| Q |
216 |
aatagctcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatg |
315 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||| |||| ||||| | || || ||||||||| | || ||| ||||||||||||||||||||||| |
|
|
| T |
15234048 |
aatagctcctaatattttaacatcacaaggtaaattttcaagtccagcttgaattgcaatgttatgagcaatattagcaccagcactatcaccaccaatg |
15234147 |
T |
|
| Q |
316 |
aaaa |
319 |
Q |
| |
|
|||| |
|
|
| T |
15234148 |
aaaa |
15234151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University