View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028-Insertion-1 (Length: 1004)

Name: NF5028-Insertion-1
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028-Insertion-1
NF5028-Insertion-1
[»] chr2 (2 HSPs)
chr2 (481-698)||(22018619-22018836)
chr2 (481-673)||(20714180-20714372)
[»] chr4 (3 HSPs)
chr4 (485-558)||(21261870-21261943)
chr4 (304-371)||(21261605-21261672)
chr4 (206-263)||(21263459-21263516)
[»] chr8 (3 HSPs)
chr8 (7-114)||(32865471-32865577)
chr8 (481-674)||(22527881-22528074)
chr8 (481-674)||(25990502-25990695)
[»] scaffold0097 (1 HSPs)
scaffold0097 (481-674)||(18019-18212)
[»] chr6 (1 HSPs)
chr6 (481-674)||(33094496-33094689)
[»] chr5 (2 HSPs)
chr5 (481-674)||(13173069-13173262)
chr5 (196-254)||(4943810-4943868)
[»] chr3 (1 HSPs)
chr3 (481-674)||(20986582-20986775)
[»] scaffold1789 (1 HSPs)
scaffold1789 (481-674)||(970-1163)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 481 - 698
Target Start/End: Original strand, 22018619 - 22018836
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22018619 ggatagtcgggcacaatgagatgtaacatttctttgtggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 22018718  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactcctctga 680  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  22018719 atactttaggcaaggaagttggttcaacaccaatttcaactaattcagcccaaatatctccaccattagcactcttactctatttgaccaactcctctga 22018818  T
Q  681 gctcattttaaacacctc 698  Q
    ||||||||||||||||||    
T  22018819 gctcattttaaacacctc 22018836  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 481 - 673
Target Start/End: Original strand, 20714180 - 20714372
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  20714180 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 20714279  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaact 673  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| |||||||||||||||    
T  20714280 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcatcactagaactcttattctgtttgaccaact 20714372  T

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Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 21261870 - 21261943
Alignment:
Q  485 agtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatca 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261870 agtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatca 21261943  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 21261605 - 21261672
Alignment:
Q  304 tatcttccactttatagcaccagaatgacaataataattaactaccaaaacaattgtcatcaaactat 371  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21261605 tatctttcactttatagcaccagaatgacaataataattaattaccaaaacaattgtcatcaaactat 21261672  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 21263459 - 21263516
Alignment:
Q  206 tagcagatttcaaattttgactaacagagaaaagtaatgaaccattacaataccatca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21263459 tagcagatttcaaattttgactaacagagaaaagtaatgaacctttacaataccatca 21263516  T

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Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 32865577 - 32865471
Alignment:
Q  7 aagaaaatgatgtgaaaaaatgattgcaaggtcagttcagataatttcagttagaaacaattagaatgatcacatattttggataacttcaaaccatttc 106  Q
    |||||||| | |||||||| ||||| |||| ||||||| |||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  32865577 aagaaaatcacgtgaaaaactgattacaagatcagttcggatatttt-agttagaaacaattagaaagatcacatgttttggataacttcaaaccatttc 32865479  T
Q  107 ccaaaact 114  Q
    ||||||||    
T  32865478 ccaaaact 32865471  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Original strand, 22527881 - 22528074
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  22527881 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 22527980  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  22527981 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 22528074  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Original strand, 25990502 - 25990695
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  25990502 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 25990601  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  25990602 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 25990695  T

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Target: scaffold0097 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Original strand, 18019 - 18212
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  18019 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 18118  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  18119 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 18212  T

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Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Complemental strand, 33094689 - 33094496
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  33094689 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 33094590  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  33094589 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 33094496  T

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Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Original strand, 13173069 - 13173262
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  13173069 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 13173168  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  13173169 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 13173262  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 4943868 - 4943810
Alignment:
Q  196 gagctaatagtagcagatttcaaattttgactaacagagaaaagtaatgaaccattaca 254  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4943868 gagctaacagtagcagatttcaaattttgactaacagagaaaagtaatgaacctttaca 4943810  T

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Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 481 - 674
Target Start/End: Complemental strand, 20986775 - 20986582
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  20986775 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 20986676  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  20986675 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 20986582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1789 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 481 - 674
Target Start/End: Complemental strand, 1163 - 970
Alignment:
Q  481 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 580  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  1163 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 1064  T
Q  581 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc 674  Q
    | ||   ||||||||| |||  |||||||||||| ||||| || | |||||||| |||| || ||  |  ||||||| ||||||||||||||||    
T  1063 agacacaaggcaaggatgcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc 970  T

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