View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028-Insertion-3 (Length: 882)
Name: NF5028-Insertion-3
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 767; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 8 - 832
Target Start/End: Complemental strand, 5763981 - 5763160
Alignment:
| Q |
8 |
gtaaatttctagtcaatatgctacttgacaatataaacacatcatgacaatgttgcaattattaaattgtgaccgttgtgttgcggttttactgtaaacc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763981 |
gtaaatttctagtcaatatgctacttgacaaaataaacacatcatgacaatgttgcaattattaaattgtgaccgttgtgttgcggttttactgtaaacc |
5763882 |
T |
|
| Q |
108 |
ttaatattgctagcaaatgtggtcgatatgaccacaattgctgttgtgatgtgattgtaaaaacatctgaaacctttatgattgcaattacgcttgaaga |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5763881 |
ttaatattgctagcaaatgcggtcgatatgaccacaattgcggttgcgatatgattgtaaaaacatctgaaacctttatggttgcaattacgcttgaaga |
5763782 |
T |
|
| Q |
208 |
ccgcaatatagaaccatggagtaaaaataaagaagcaagataagagaggggaatgttgtgtcttacgtaggaatgatactattccagatccagcagccag |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763781 |
ccgcaatatagaaccatggagtaaaaataaagaagcaagataagagaggggaatgttgtgtcttacgtaggaatgatactattccagatccagcagccag |
5763682 |
T |
|
| Q |
308 |
gtaaatgaacaataatgaaacctgaaattgcaagtgcattagttcatgcaatcaaaatttgtaccaactatgaatgaactagtaagaaaacattataaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763681 |
gtaaatgaacaataatgaaacctgaaatttcaagtgcattagttcatgcaatcaaaatttgtaccaactatgaatgaactagtaagaaaacattataaaa |
5763582 |
T |
|
| Q |
408 |
atatatcaatctctataatacaaatagctagctaaaggggaacaataaagcaccttagaaacttctttgactatgtggtgaggatctgttgagccaaagg |
507 |
Q |
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| T |
5763581 |
atatatcaatctctataatacaaatagctagctaaaggggaacaataaagcaccttagaaacttctttgactatgtggtgaggatctattgagccaaagg |
5763482 |
T |
|
| Q |
508 |
tattgatgattttgccaagaatgagagtcatgataggctgtatcataccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagact |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763481 |
tattgatgattttgccaagaatgagagtcatgataggctgtgtcataccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagact |
5763382 |
T |
|
| Q |
608 |
atcagcaaaagtgaagagtttgtggaatgaaactttctggttggctttgttatctctttcatgttcatcatcaacctcagtgttatgtgccatattgtgg |
707 |
Q |
| |
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| T |
5763381 |
atcagcaaaagtaaagagtttgtggaatgaaactttctggttggctttgttatctctttcatgttc---atcaacctcagtgttatgtgccatattgtga |
5763285 |
T |
|
| Q |
708 |
gttagagtaaagtgggaagttgaatggcaataaacaagggtatttattcaaatactgactcattcattttcatatcaagattcatttttacacgtaaagt |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763284 |
gttagagtaaagtgggaagttgaatggcaataaacaagggtatttattcaaatactgactcattcattttcatatcaagattcatttttacacgtaaagt |
5763185 |
T |
|
| Q |
808 |
ttaatttgatttgatacacgaatgt |
832 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
5763184 |
ttaatttgatttgatacacgaatgt |
5763160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 555 - 664
Target Start/End: Original strand, 5835266 - 5835375
Alignment:
| Q |
555 |
ccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtgaagagtttgtggaatgaaactttctggttggctt |
654 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| || ||| ||||| |||||| || || | || |
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| T |
5835266 |
ccattagccacagcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttt |
5835365 |
T |
|
| Q |
655 |
tgttatctct |
664 |
Q |
| |
|
|||||||||| |
|
|
| T |
5835366 |
tgttatctct |
5835375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 5820822 - 5820755
Alignment:
| Q |
268 |
tcttacgtaggaatgatactattccagatccagcagccaggtaaatgaacaataatgaaacctgaaat |
335 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| || | |||||||| || ||||| | |||||||||| |
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| T |
5820822 |
tcttacgtagaaatgatgctattccagatccaacaccaaggtaaataaataataacgcaacctgaaat |
5820755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 643
Target Start/End: Complemental strand, 5820619 - 5820435
Alignment:
| Q |
459 |
accttagaaacttctttgactatgtggtga-ggatctgttgagccaaaggtattgatgattttgccaagaatgagagtcatgataggctg-tatcatacc |
556 |
Q |
| |
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|||||||||||||||||||| |||| |||| ||||| || ||||||||||| ||||||| ||| |||| ||| || ||||| | |||||| || || || |
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| T |
5820619 |
accttagaaacttctttgacaatgt-gtgatggatcggtggagccaaaggtgttgatgagttttccaaaaataagtgtcataagaggctgagataat-cc |
5820522 |
T |
|
| Q |
557 |
attagcaacggcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtgaagagtttgtggaatgaaacttt |
643 |
Q |
| |
|
|||||| |||||| | ||| |||||||||||||| | || ||||| | ||||||||| |||| ||||||| ||| | |||||| |
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| T |
5820521 |
attagctacggcacatatgaaaccaatgatcatcaaaatcacgtcaagtttgtcagcaaaattgaatagtttgtagaaaggaacttt |
5820435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 29332738 - 29332842
Alignment:
| Q |
555 |
ccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtgaagagtttgtggaatgaaactttctggttggctt |
654 |
Q |
| |
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|||||||| | |||||| || ||||||||||||||||| ||||| ||||||| |||||||||| | ||||| |||| ||||| |||| | |||||||||| |
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| T |
29332738 |
ccattagccatggcagaaatagtgccaatgatcatcaaagttacgtcaagacgatcagcaaaactaaagagcttgtagaatggaactatttggttggctt |
29332837 |
T |
|
| Q |
655 |
tgtta |
659 |
Q |
| |
|
||||| |
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|
| T |
29332838 |
tgtta |
29332842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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