View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028-Insertion-5 (Length: 744)
Name: NF5028-Insertion-5
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 8 - 744
Target Start/End: Original strand, 9303881 - 9304616
Alignment:
| Q |
8 |
gcttttgcaagaaaagtttggaggttataatttgtggggacatggctgtcaagggtgaatacaaagcagaagctggagtttattcctgtggttccacctg |
107 |
Q |
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| T |
9303881 |
gcttttgcaagaaaagtttggaggttattctttgtggggacatggctgtcaagggtgaatacaaagcagaagctggagtttattcctgtggttccacctg |
9303980 |
T |
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| Q |
108 |
tggaaacaaacttgcatgtggtaatcacatgtgtattgagacctgtcatccgggaagttgtaatgagtgtccaatgttgccaaccaatgttaagacatgc |
207 |
Q |
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| T |
9303981 |
tggaaacaaacttgcatgtggtaatcacatgtgtattgagacctgtcatccgggaagttgtgttgagtgtccattgttgccaaccaatgttaagacatgc |
9304080 |
T |
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| Q |
208 |
ttctgcgggaaaactaggttgggtgaggaacggctgagttgtttagacccaattcctacatgttcacaagtatgtggcaagacccttccttgcggtatgc |
307 |
Q |
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| T |
9304081 |
ttctgcgggaaaactaggttgggtgaggaacggctgagttgtttagacccaattcctacatgttcacaagtatgtggcaagacccttccttgcggtatgc |
9304180 |
T |
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| Q |
308 |
atcattgtaccctgacatgccatgatggggattgttctccttgttcagttttagtctcccagaagtgtcggtgtggctcaacttccaaaacggtggagtg |
407 |
Q |
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| T |
9304181 |
atcattgtacactgacatgccatgacggggattgttctccttgttcagttttagtctcccagaagtgtcggtgtggctcaacttccaaaacggtggagtg |
9304280 |
T |
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| Q |
408 |
ctgtaagaaaacaatggagaatgagacatttacttgtgaaaagccttgtgggaagaaaaggaattgtggaaggcatcgttgtagtgaacggtgttgtcca |
507 |
Q |
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| T |
9304281 |
ctgtaagaaaacaatggcgaatgagaaatttacttgtgaaaagccttgtgggaagaaaaggaattgtggaaggcatcgttgtagtgaacggtgttgtccg |
9304380 |
T |
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| Q |
508 |
ctctctaatccaaataatattctaaatgcaacggattcggatccacatctatgttccattccatgtggaaagaagctacgttgtgggaagcatgcgtgtg |
607 |
Q |
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| T |
9304381 |
ctctctaatccaaataatattctaaatgcaacggattcggatccacatctatgttccattccatgtggaaagaagctacgttgtgggaagcatgcgtgtg |
9304480 |
T |
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| Q |
608 |
attccaattgtcacagtggtcattgcccaccttgtcttgaaactatattcactgatttgacatgtgcttgtggcaagacttcaatccctcctccattgcc |
707 |
Q |
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| T |
9304481 |
attccaattgtcacagtggtcattgcccaccttgtcttgaaactatattcactgatttgacatgtgcttgtggcaagacttcaatccctcctccactgcc |
9304580 |
T |
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| Q |
708 |
ttgtgggtacaccgtcgccttcatgtcaacttccatg |
744 |
Q |
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| T |
9304581 |
atgt-ggtacaccgtcgccttcatgtcaacttccatg |
9304616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 367 - 701
Target Start/End: Original strand, 26284208 - 26284539
Alignment:
| Q |
367 |
cagaagtgtcggtgtggctcaacttccaaaacggtggagtgctgtaagaaaacaatggagaatgagacatttacttgtgaaaagccttgtgggaagaaaa |
466 |
Q |
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||||| ||||| |||||||||||||||| ||| ||||| |||| ||| | |||| |||||| ||| |||||||||| ||||||| |||||| || | |
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| T |
26284208 |
cagaaatgtcgttgtggctcaacttccagaactgtggaatgctataaaacaaca---gagaatcagaaatttacttgtcaaaagccgtgtggggcaaaga |
26284304 |
T |
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| Q |
467 |
ggaattgtggaaggcatcgttgtagtgaacggtgttgtccactctctaatccaaataatattctaaatgcaacggattcggatccacatctatgttccat |
566 |
Q |
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| T |
26284305 |
agaattgtggaaggcaccggtgtagtgaaaagtgttgtccattgtctggtccaaataatggtttgactactccggattgggatcctcacttttgttccat |
26284404 |
T |
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| Q |
567 |
tccatgtggaaagaagctacgttgtgggaagcatgcgtgtgattccaattgtcacagtggtcattgcccaccttgtcttgaaactatattcactgatttg |
666 |
Q |
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| T |
26284405 |
gctgtgtgggaagaagctgagatgtggtcagcatgtgtgtgaaacgttgtgtcacagtggtcattgcccaccttgtcttgaaacaatcttcactgattta |
26284504 |
T |
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| Q |
667 |
acatgtgcttgtggcaagacttcaatccctcctcc |
701 |
Q |
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| T |
26284505 |
gcatgtgcttgtggtatgacttcaattcctcctcc |
26284539 |
T |
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Back To:
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