View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028-Insertion-7 (Length: 429)
Name: NF5028-Insertion-7
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Original strand, 30801233 - 30801650
Alignment:
| Q |
8 |
taatcaaccacaaaaattgatcatatactatgttctacttatgcaaaacatgttcttactctaatggtgcattttttcaacaaatacctttaccatagtn |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801233 |
taatcaaccacaaaaattgatcatatactatgttctacttatgcaaaacatgttcttactctaatggtgcattttttcaacaaatacctttaccatagta |
30801332 |
T |
|
| Q |
108 |
nnnnnnnnttgtccctttaccatcacgaaagggtaaaaaagtaatgaatagatattaattaattgtgatnnnnnnnnnnttgtgaaaagtttttaactct |
207 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30801333 |
aaaaaaa-ttgtccctttactatcacgaaagggtaaaaaagtaatgaatagatattaattaattgtgataaaaaaaa--ttgtgaaaagtttttaactct |
30801429 |
T |
|
| Q |
208 |
tcataagtgctgaaaactagttaattttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttttcacatgaaacgacggaaacta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801430 |
tcataagtgctgaaaactagttaattttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttttcacatgaaacgacggaaacta |
30801529 |
T |
|
| Q |
308 |
tgactgaaactctcaagnnnnnnnatgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatt |
407 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801530 |
tgactgaaactctcaagtttttttatgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatt |
30801629 |
T |
|
| Q |
408 |
tcgaatttccttctatgcttc |
428 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
30801630 |
tcgaatttccttctttgcttc |
30801650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 187 - 427
Target Start/End: Original strand, 30798753 - 30798994
Alignment:
| Q |
187 |
ttgtgaaaagtttttaactcttcataagtgctgaaaactagtt-aattttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttt |
285 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| ||||| |||||||| |||| ||||||||||||||||||| |||| |||| || || || || |
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| T |
30798753 |
ttgtgaagggtttttaactcttcataagagctaaaaattagtttaatttttttcgagaatatgaaatacactataaaa-gatcaaatcatactctatatt |
30798851 |
T |
|
| Q |
286 |
tcaca-tgaaacgacggaaa-ctatgactgaaactctcaagnnnnnnnatgctatgattctttttctttccttgtttcttatcacaacaaatgttggtgg |
383 |
Q |
| |
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||||| ||||| |||| ||| |||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||| || | |||||||| |
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| T |
30798852 |
tcacaatgaaa-gacgaaaaactatgattgaaactctcaaatttgtttatgcaatgattctttttctttccttatttcttatcacatcagaagttggtgg |
30798950 |
T |
|
| Q |
384 |
ttgtaagccatgttttcatccatttcgaatttccttctatgctt |
427 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||| ||||| |
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|
| T |
30798951 |
ttgtaagccatattttcatccattttgaatttccttctttgctt |
30798994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 30796406 - 30796559
Alignment:
| Q |
8 |
taatcaaccacaaaaattgatcatatactatgttctacttatgcaaaacatgttcttactctaatggtgcattttttcaacaaatacctttaccatagtn |
107 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
30796406 |
taatcaaccacaaaaattggtcatacaatatgttctactagtgcataacatgttcttactccaatggtgcattttatcaacaaatacttttaccatagta |
30796505 |
T |
|
| Q |
108 |
nnnnnnnnttgtccctttaccatcacgaaagggt-aaaaaagtaatgaatagat |
160 |
Q |
| |
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|||||||| ||| ||||| ||||||| ||||||||||||||||||| |
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|
| T |
30796506 |
aacaaaatttgtccctatactatcacaaaagggtaaaaaaagtaatgaatagat |
30796559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 30804932 - 30805030
Alignment:
| Q |
8 |
taatcaaccacaaaaattgatcatatactatgttctacttatgcaaaacatgttcttactctaatggtgcattttttcaacaaatacctttaccatagt |
106 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
30804932 |
taatcaactacaaaaattgatcatacattatgttctacttgtgcataacatgttcttactgcaatggtgcattttttcaacaaataccttttccatagt |
30805030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 334 - 427
Target Start/End: Original strand, 30805401 - 30805494
Alignment:
| Q |
334 |
gctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctatgctt |
427 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || || | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
30805401 |
gctatgattctttttctttccttctttcttatcgcatcagaagttggtggttgtaagccatgttttcatccatttcaaatttccttctttgctt |
30805494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 30805223 - 30805357
Alignment:
| Q |
187 |
ttgtgaaaagtttttaactcttcataagtgctgaaaactagtta-attttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttt |
285 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||| || |||||||||||| | ||||||||||||| ||||||||||||| |||| || || |
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|
| T |
30805223 |
ttgtgaagggtttttaactcttcataagtgctaaaaattagctagtttttttaggagaatgtgaaatacactat-aaaagatccaatcatattttatatt |
30805321 |
T |
|
| Q |
286 |
tcacatgaaacgacg-gaaactatgactgaaactct |
320 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| |
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|
| T |
30805322 |
tcacataaaacgacgaaaaactatgactgaaactct |
30805357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 427
Target Start/End: Original strand, 30809265 - 30809359
Alignment:
| Q |
333 |
tgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctatgctt |
427 |
Q |
| |
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||||||||||| ||| ||||||| ||||||||||||| | | |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||| |
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| T |
30809265 |
tgctatgattcaatttatttccttatttcttatcacaatagaagttggtcgttgtaagtcatgttttcatccatttcaaattttcttctttgctt |
30809359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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