View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028-Insertion-8 (Length: 100)

Name: NF5028-Insertion-8
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028-Insertion-8
NF5028-Insertion-8
[»] chr7 (10 HSPs)
chr7 (8-100)||(13774829-13774921)
chr7 (9-100)||(13774770-13774861)
chr7 (8-100)||(13774949-13775041)
chr7 (8-100)||(13775009-13775101)
chr7 (8-100)||(13775189-13775281)
chr7 (8-100)||(13775249-13775341)
chr7 (8-100)||(13774889-13774981)
chr7 (8-100)||(13775129-13775221)
chr7 (8-100)||(13775309-13775401)
chr7 (8-100)||(13775069-13775161)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 2e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13774829 - 13774921
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    |||||||||||||| ||| |||||||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13774829 atctttttgatcggtattcttcacaatttcctcttcatatctctcagctacgatcacaacatctttttgatcggcgttcttcacaatttcctc 13774921  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-31
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 13774770 - 13774861
Alignment:
Q  9 tctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    |||||||||||| | || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13774770 tctttttgatcgacgttcttcacagtttcctcttcagatatctcagctacgatcacaacatctttttgatcggtattcttcacaatttcctc 13774861  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13774949 - 13775041
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    |||||||| |||||| || ||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13774949 atcttttttatcggcgttcttcacaatttcctcttcagatgtcccagctacgatcacagcatctttttgatcggcattcttcacaatttcctc 13775041  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775009 - 13775101
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    |||||||||||||||||| ||||||||||||||||   || |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  13775009 atctttttgatcggcattcttcacaatttcctctttatatctctcagcttcgatcacaacatctttttgatcggcgttcttcacaatttcctc 13775101  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775189 - 13775281
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    ||||||||||| |||||| |||||||||||||||||  || |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  13775189 atctttttgattggcattcttcacaatttcctcttcatatctctcagcttcgatcacaacatctttttgatcggcgttcttcacaatttcctc 13775281  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775249 - 13775341
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    ||||||||||||||| || ||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13775249 atctttttgatcggcgttcttcacaatttcctctccatatatctcagctaccatcacaacatctttttgatcggcgttcttcacaatttcctc 13775341  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13774889 - 13774981
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    ||||||||||||||| || ||||||||||||||| | ||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||    
T  13774889 atctttttgatcggcgttcttcacaatttcctctccagatatctcatctaccatcacaacatcttttttatcggcgttcttcacaatttcctc 13774981  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775129 - 13775221
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    |||||||| |||| | || ||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  13775129 atcttttttatcgacgttcttcacaatttcctcttcagatatcccagctacgatcgcaacatctttttgattggcattcttcacaatttcctc 13775221  T

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Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775309 - 13775401
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    ||||||||||||||| || ||||||||||||||| | |||||||||||||| |||||||||||||||||| |||  | |||||||||||||||    
T  13775309 atctttttgatcggcgttcttcacaatttcctctccagatatctcagctaccatcacaacatctttttgagcggtgtccttcacaatttcctc 13775401  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13775069 - 13775161
Alignment:
Q  8 atctttttgatcggcattattcacaatttcctcttcggatatctcagctacgatcacaacatctttttgatcggcattcttcacaatttcctc 100  Q
    ||||||||||||||| || ||||||||||||||| | ||||||||| |||| || ||||||||||||| |||| | |||||||||||||||||    
T  13775069 atctttttgatcggcgttcttcacaatttcctctccagatatctcatctaccattacaacatcttttttatcgacgttcttcacaatttcctc 13775161  T

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