View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028-Insertion-9 (Length: 167)

Name: NF5028-Insertion-9
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028-Insertion-9
NF5028-Insertion-9
[»] chr3 (1 HSPs)
chr3 (90-167)||(39484452-39484529)
[»] chr2 (1 HSPs)
chr2 (96-166)||(38955121-38955191)
[»] chr1 (1 HSPs)
chr1 (96-166)||(22964726-22964796)
[»] chr8 (1 HSPs)
chr8 (91-155)||(38442253-38442317)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 7e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 39484452 - 39484529
Alignment:
Q  90 cgctgaccttctttacctatcctcctcctagcatgcgtttctatacgacacttcaacccaccaccaccatcagctttg 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39484452 cgctggccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttg 39484529  T

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Target: chr2 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 38955121 - 38955191
Alignment:
Q  96 ccttctttacctatcctcctcctagcatgcgtttctatacgacacttcaacccaccaccaccatcagcttt 166  Q
    ||||||||||| |||||||||||||| ||||||| || || ||||||||||||||||||||||||| ||||    
T  38955121 ccttctttacccatcctcctcctagcctgcgtttatacacaacacttcaacccaccaccaccatcaacttt 38955191  T

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Target: chr1 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 22964796 - 22964726
Alignment:
Q  96 ccttctttacctatcctcctcctagcatgcgtttctatacgacacttcaacccaccaccaccatcagcttt 166  Q
    ||||||||||| | |||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||    
T  22964796 ccttctttacccaccctcctcctagcctgcgtttctacacaacacttcaacccaccaccaccatcaacttt 22964726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 38442253 - 38442317
Alignment:
Q  91 gctgaccttctttacctatcctcctcctagcatgcgtttctatacgacacttcaacccaccacca 155  Q
    |||| |||| ||||||||||||||||||| | |||| ||||  ||  ||||||||||||||||||    
T  38442253 gctggccttttttacctatcctcctcctaccctgcgcttctgcacaccacttcaacccaccacca 38442317  T

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