View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5028_high_9 (Length: 206)
Name: NF5028_high_9
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 28095108 - 28094993
Alignment:
| Q |
74 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28095108 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgt |
28095009 |
T |
|
| Q |
174 |
ttggcctggaacacat |
189 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28095008 |
ttggcctggaacacat |
28094993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26155653 - 26155707
Alignment:
| Q |
78 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatg |
132 |
Q |
| |
|
||||||| |||||||||||| ||| || || |||||||| ||||||||||||||| |
|
|
| T |
26155653 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatg |
26155707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26168951 - 26169005
Alignment:
| Q |
78 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatg |
132 |
Q |
| |
|
||||||| |||||||||||| ||| || || |||||||| ||||||||||||||| |
|
|
| T |
26168951 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatg |
26169005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University