View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028_low_1 (Length: 1010)
Name: NF5028_low_1
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 959; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 959; E-Value: 0
Query Start/End: Original strand, 1 - 994
Target Start/End: Complemental strand, 32272963 - 32271973
Alignment:
| Q |
1 |
tttttctttattttgtcacctttgtgtctgtcacaagatcttttcttaggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctacctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272963 |
tttttctttattttgtcacctttgtgtctgtcacaagatcttttcttaggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctacctt |
32272864 |
T |
|
| Q |
101 |
attttattagtatatgccacaattcttatagtattattcttaatctcattctttctcttgtttaatatgtctgcatgtgtatagaaaaacacacaagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272863 |
attttattagtatatgccacaattcttatagtattattcttaatctcattctttctcttgtttaatatgtctgcatgtgtatagaaaaacacacaagatt |
32272764 |
T |
|
| Q |
201 |
tcattcatgtacaattgaatattctatatttgagaatgttctatggatttaatattcttttattattttctcaattgaaaagcacagatccttttgttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272763 |
tcattcatgtacaattgaatattctatatttgagaatgttctatggatttaatattcttttattattttctcaattgaaaagcacagatccttttgttaa |
32272664 |
T |
|
| Q |
301 |
attaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaataatagtgttattagtacatatgatttccgacaccgtatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32272663 |
attaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaataa--gtgttattagtacatatgatttccgacaccgtatct |
32272566 |
T |
|
| Q |
401 |
tgacaccatataacattgagtgtgatcttgtcaaaagaaaacatttagtatgaacaatggtcccgaggagagagaacaaacatcggatgataaagataat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32272565 |
tgacaccatataacattgagtgtgatcttgtcaaaagaaaacattgagtatgaacaatggtcccgaggagagagaacaaacatcggatgagaaagataat |
32272466 |
T |
|
| Q |
501 |
ataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataaattatattattttcatgttca |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272465 |
ataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataaattatattattttcatgttca |
32272366 |
T |
|
| Q |
601 |
ttaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattattttgattttgatcttcatgtcaca |
700 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272365 |
t-aaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattattttgattttgatcttcatgtcaca |
32272267 |
T |
|
| Q |
701 |
cagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272266 |
cagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgt |
32272167 |
T |
|
| Q |
801 |
cctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtgg |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
32272166 |
cctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctacgagccaggtcttgaagccgtgg |
32272067 |
T |
|
| Q |
901 |
tgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacacc |
994 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32272066 |
tgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacacc |
32271973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 725 - 991
Target Start/End: Complemental strand, 19327411 - 19327145
Alignment:
| Q |
725 |
aaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtc |
824 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||| | || || |
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|
| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattgaggtagctgttgtt |
19327312 |
T |
|
| Q |
825 |
gatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaacc |
924 |
Q |
| |
|
||||| | |||| ||||||| | ||||||||| |||||| | || || |||||||| |||||||| | ||||||||| ||||||| |||| ||||| |
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|
| T |
19327311 |
gatatcgccacgcctcgaatcaatgcttggaacagtgaccacttgcctatatatgagcctggtcttgatgatgtggtgaagaagtgcagaggaaagaacc |
19327212 |
T |
|
| Q |
925 |
ttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacac |
991 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||| | || || ||||| || |||||||| |
|
|
| T |
19327211 |
ttttcttcagcactgatgttgagaaacatgttgccgaggctaacatcgtgtttgtttcggtgaacac |
19327145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 726 - 790
Target Start/End: Complemental strand, 3665277 - 3665213
Alignment:
| Q |
726 |
aaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgc |
790 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||| |
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|
| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgc |
3665213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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