View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028_low_2 (Length: 473)

Name: NF5028_low_2
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028_low_2
NF5028_low_2
[»] chr2 (9 HSPs)
chr2 (219-390)||(12250630-12250796)
chr2 (1-61)||(12258549-12258609)
chr2 (1-60)||(11999534-11999593)
chr2 (9-57)||(7542374-7542422)
chr2 (9-61)||(14703556-14703608)
chr2 (23-61)||(16661960-16661998)
chr2 (5-57)||(12245378-12245430)
chr2 (8-59)||(43625559-43625610)
chr2 (17-57)||(12234845-12234885)
[»] chr1 (3 HSPs)
chr1 (8-61)||(15595181-15595234)
chr1 (1-60)||(34466762-34466821)
chr1 (25-61)||(4678526-4678562)
[»] chr7 (17 HSPs)
chr7 (1-59)||(8382846-8382904)
chr7 (23-59)||(8590800-8590836)
chr7 (23-59)||(29581811-29581847)
chr7 (9-57)||(8654598-8654646)
chr7 (5-61)||(17268083-17268139)
chr7 (23-59)||(29577642-29577678)
chr7 (25-60)||(8659527-8659562)
chr7 (23-57)||(8585678-8585712)
chr7 (23-57)||(8628694-8628728)
chr7 (5-51)||(8647021-8647067)
chr7 (23-56)||(7877706-7877739)
chr7 (4-57)||(8602117-8602170)
chr7 (23-59)||(8538198-8538234)
chr7 (25-61)||(10494342-10494378)
chr7 (25-61)||(13333424-13333460)
chr7 (5-61)||(17260385-17260441)
chr7 (5-57)||(27830847-27830899)
[»] chr4 (3 HSPs)
chr4 (12-61)||(30775403-30775452)
chr4 (1-61)||(35132588-35132648)
chr4 (309-385)||(11120636-11120715)
[»] chr8 (1 HSPs)
chr8 (5-59)||(43744993-43745047)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 219 - 390
Target Start/End: Complemental strand, 12250796 - 12250630
Alignment:
Q  219 ctcaccaagcaaaactgaagtttgttttagaaaacattgtattttcaatttagttagctataaatatttaccttgctttcgttagcatttcatttcatcc 318  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||||    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  12250796 ctcaccaagcaaaactgaattttgttttagaaaatattgtattctcaatttag----ctataaatatttaccttgcattccttagcatt-catttcatcc 12250702  T
Q  319 acacttgcttttctattggttttctttccgttaaaccatttacactttccacaaaatcattcatggcgtggg 390  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12250701 acacttgcttttctattggttttctttcagttaaaccatttacactttccacaaaatcattcatggcgtggg 12250630  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12258609 - 12258549
Alignment:
Q  1 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12258609 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 12258549  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11999534 - 11999593
Alignment:
Q  1 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagac 60  Q
    |||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||    
T  11999534 gacattgtccttaattgttagtatagacaaatcaaaagtgccaccgccaagatcaaagac 11999593  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 7542374 - 7542422
Alignment:
Q  9 ccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  7542374 ccttaatcgttagtaaagacacatcaaaagtgccaccgccaagatcaaa 7542422  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 14703556 - 14703608
Alignment:
Q  9 ccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    
T  14703556 ccttaattgttaggagagacacgtcaaaagtaccaccaccaagatcaaagaca 14703608  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 16661998 - 16661960
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  16661998 agagacacatcaaaagtcccaccaccaagatcaaagaca 16661960  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 12245430 - 12245378
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||||||| ||||| | ||| || ||||||||||||||||||||||||||    
T  12245430 ttatccttaatagttaggatagaaacgtcaaaagtgccaccaccaagatcaaa 12245378  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 43625559 - 43625610
Alignment:
Q  8 tccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    |||||||| || |||| ||||||||||||||| ||||||||||| |||||||    
T  43625559 tccttaattgtaagtatagacacatcaaaagtaccaccaccaaggtcaaaga 43625610  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12234845 - 12234885
Alignment:
Q  17 gttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||| ||||||||||||||||||||||| || ||||||||    
T  12234845 gttaggagagacacatcaaaagtgccaccgccgagatcaaa 12234885  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 15595181 - 15595234
Alignment:
Q  8 tccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  15595181 tccttaattgttaggatagacacatcaaaagtgccaccaccaagatcaaagaca 15595234  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34466821 - 34466762
Alignment:
Q  1 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagac 60  Q
    ||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||    
T  34466821 gacattatccttaattgtaaggagagacacatcaaaagtcccaccaccaaggtcaaagac 34466762  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4678562 - 4678526
Alignment:
Q  25 agacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  4678562 agacacatcaaaagtaccaccaccaaggtcaaagaca 4678526  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8382904 - 8382846
Alignment:
Q  1 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    |||||||| |||||| || || ||||||||||||||||| |||||||||||||||||||    
T  8382904 gacattattcttaattgtgaggagagacacatcaaaagttccaccaccaagatcaaaga 8382846  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 8590800 - 8590836
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  8590800 agagacacatcaaaagtgccaccaccaagatcaaaga 8590836  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 29581847 - 29581811
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  29581847 agagacacatcaaaagtgccaccaccaagatcaaaga 29581811  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 8654598 - 8654646
Alignment:
Q  9 ccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||| || |||| ||||||||||||||| |||||||||||||||||    
T  8654598 ccttaattgtgagtatagacacatcaaaagtaccaccaccaagatcaaa 8654646  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 17268083 - 17268139
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||| || |  ||||||||||||||||| ||||||||||| |||||||||    
T  17268083 ttatccttaattgtaacgagagacacatcaaaagtcccaccaccaaggtcaaagaca 17268139  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 29577678 - 29577642
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29577678 agagacacatcaaaggtgccaccaccaagatcaaaga 29577642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 8659527 - 8659562
Alignment:
Q  25 agacacatcaaaagtgccaccaccaagatcaaagac 60  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8659527 agacacatcaaaagtaccaccaccaagatcaaagac 8659562  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 8585712 - 8585678
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||||||||||||| |||||||||||||||||    
T  8585712 agagacacatcaaaagtcccaccaccaagatcaaa 8585678  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 8628694 - 8628728
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||||||||||||| |||||||||||||||||    
T  8628694 agagacacatcaaaagtcccaccaccaagatcaaa 8628728  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 8647021 - 8647067
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaag 51  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||    
T  8647021 ttatccttaattgtaaggagagacacatcaaaagttccaccaccaag 8647067  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 7877739 - 7877706
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaa 56  Q
    ||||||||||| ||||||||||||||||||||||    
T  7877739 agagacacatcgaaagtgccaccaccaagatcaa 7877706  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 8602117 - 8602170
Alignment:
Q  4 attatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||| |||||| || || ||||| ||||||||||| |||||||||||||||||    
T  8602117 attattcttaattgtgagaagagaaacatcaaaagttccaccaccaagatcaaa 8602170  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 8538198 - 8538234
Alignment:
Q  23 agagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  8538198 agagatacatcaaaagttccaccaccaagatcaaaga 8538234  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 10494378 - 10494342
Alignment:
Q  25 agacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  10494378 agacacatcaaaagtaccaccacccagatcaaagaca 10494342  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 13333460 - 13333424
Alignment:
Q  25 agacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  13333460 agacacatcaaaagtaccaccacccagatcaaagaca 13333424  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 17260385 - 17260441
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||| || |  ||||||||||||||||| || |||||||| |||||||||    
T  17260385 ttatccttaattgtaacgagagacacatcaaaagtccccccaccaaggtcaaagaca 17260441  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27830899 - 27830847
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa 57  Q
    ||||||||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  27830899 ttatccttaattgtaacaagagacacatcaaaagtcccaccaccaaggtcaaa 27830847  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 30775403 - 30775452
Alignment:
Q  12 taatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  30775403 taatggtgagaagagacacatcaaaagtcccaccaccaagatcaaagaca 30775452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35132588 - 35132648
Alignment:
Q  1 gacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca 61  Q
    ||||||||||||||| || ||||  || |||||||||||||||||||||||||| ||||||    
T  35132588 gacattatccttaatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaagaca 35132648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 11120715 - 11120636
Alignment:
Q  309 catttcatccacacttgcttttctattggttttctt---tccgttaaaccatttacactttccacaaaatcattcatggc 385  Q
    ||||||||||||||||  |||||||| | |||||||   ||  ||||||||| |||| |||| |||||||||||||||||    
T  11120715 catttcatccacacttatttttctatagcttttcttctttcatttaaaccatatacagtttctacaaaatcattcatggc 11120636  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 43744993 - 43745047
Alignment:
Q  5 ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga 59  Q
    ||||||||||| || || ||||||||||||||||| |||||||| || |||||||    
T  43744993 ttatccttaattgtaaggagagacacatcaaaagtcccaccacccaggtcaaaga 43745047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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