View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028_low_3 (Length: 443)

Name: NF5028_low_3
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028_low_3
NF5028_low_3
[»] chr2 (4 HSPs)
chr2 (1-427)||(40058965-40059391)
chr2 (132-427)||(40084903-40085198)
chr2 (140-427)||(40076979-40077280)
chr2 (25-97)||(40085207-40085279)
[»] chr3 (3 HSPs)
chr3 (181-319)||(53322412-53322548)
chr3 (211-286)||(44352747-44352822)
chr3 (35-85)||(53322651-53322700)
[»] chr4 (3 HSPs)
chr4 (181-284)||(22016195-22016298)
chr4 (193-312)||(20005703-20005812)
chr4 (354-427)||(22016597-22016670)
[»] chr8 (1 HSPs)
chr8 (198-298)||(5450715-5450814)
[»] chr7 (3 HSPs)
chr7 (35-85)||(35052814-35052864)
chr7 (227-288)||(35052914-35052975)
chr7 (248-321)||(35052966-35053039)
[»] chr5 (4 HSPs)
chr5 (257-312)||(12735846-12735901)
chr5 (257-312)||(12798673-12798728)
chr5 (35-85)||(12735614-12735664)
chr5 (35-85)||(12798441-12798491)
[»] chr1 (1 HSPs)
chr1 (193-312)||(14124553-14124662)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 40059391 - 40058965
Alignment:
Q  1 tcaatccaaatgagtcaaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttcttttcctgcaagcaatgcaa 100  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40059391 tcaatccaaacgagtctaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttctttttctgcaagcaatgcaa 40059292  T
Q  101 acttttccttcacacatgaacaaattcaatacaatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacagg 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059291 acttttccttcacacatgaacaaattcaatacaatgctcaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacagg 40059192  T
Q  201 ttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaatt 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059191 ttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaatt 40059092  T
Q  301 cagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaatagaaccagaaatcaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40059091 cagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaatagaaccagaaatcaaga 40058992  T
Q  401 ctctacgtttaccatcaatgaccaatg 427  Q
    |||||||||||||||||||||||||||    
T  40058991 ctctacgtttaccatcaatgaccaatg 40058965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 132 - 427
Target Start/End: Complemental strand, 40085198 - 40084903
Alignment:
Q  132 caatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttca 231  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085198 caatgctcaaagaaaatggtaagaatgtaagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttca 40085099  T
Q  232 atgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacaga 331  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085098 ataacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacaga 40084999  T
Q  332 atcaaagagagacataaaataaaacctggggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatg 427  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084998 atcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatg 40084903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 140 - 427
Target Start/End: Complemental strand, 40077280 - 40076979
Alignment:
Q  140 aaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatc 239  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077280 aaagaaagtggtaaaaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatc 40077181  T
Q  240 aagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattc--------------aacacaca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||              ||| ||||    
T  40077180 aagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaaatcaaatacaatgcaaaaactcaca 40077081  T
Q  326 aacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaa 425  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077080 aacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaa 40076981  T
Q  426 tg 427  Q
    ||    
T  40076980 tg 40076979  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 40085279 - 40085207
Alignment:
Q  25 tgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttcttttcctgcaagcaatg 97  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40085279 tgttcagtcatgctttcaacaattagcaattcagcttaacatagacacttgttttcttttcctgcaagcaatg 40085207  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 319
Target Start/End: Complemental strand, 53322548 - 53322412
Alignment:
Q  181 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 280  Q
    |||||||  |||||||| |||| |||||||||||||||| ||||| |||  ||||||| || |||||||||| || |||| ||||| |||| ||||||||    
T  53322548 agaacctaacctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccaca 53322451  T
Q  281 tctataaacaacaacaaattcagcactgtttaaattcaa 319  Q
    ||||||| |||||||||||||| ||| ||||||| ||||    
T  53322450 tctataaccaacaacaaattcaacaccgtttaaaatcaa 53322412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 44352747 - 44352822
Alignment:
Q  211 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctata 286  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| | | | ||||||||  | |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatctata 44352822  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 53322700 - 53322651
Alignment:
Q  35 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 85  Q
    |||||||||||||||||||||| | |||| ||| |||||||||||||||||    
T  53322700 tgctttcaacaattagcaattcagattaa-atacacacttgttttcttttc 53322651  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 22016195 - 22016298
Alignment:
Q  181 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 280  Q
    ||||||||||||  ||| || || || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  22016195 agaacctggcctcgaaccggctcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 22016294  T
Q  281 tcta 284  Q
    ||||    
T  22016295 tcta 22016298  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 20005812 - 20005703
Alignment:
Q  193 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 292  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  20005812 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 20005723  T
Q  293 aacaaattcagcactgttta 312  Q
    |||||||||| ||| |||||    
T  20005722 aacaaattcaacaccgttta 20005703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 22016597 - 22016670
Alignment:
Q  354 aacctggggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatg 427  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || ||||||||||||||||||||||    
T  22016597 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatg 22016670  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 5450814 - 5450715
Alignment:
Q  198 aggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaa 297  Q
    ||||||||||   ||||||||||||||||||| ||| ||||| | |||||| |||||||  ||||| ||||| |||||||||||||| ||||||||||||    
T  5450814 aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatcta-aaacaacaacaa 5450716  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 35052814 - 35052864
Alignment:
Q  35 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 85  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  35052814 tgctttcaacaattagcaattcagcttaacatacacacttgttttcttttc 35052864  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 35052914 - 35052975
Alignment:
Q  227 tttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaa 288  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  35052914 tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatctataaa 35052975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 35052966 - 35053039
Alignment:
Q  248 catctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaaca 321  Q
    ||||| || |||| |||||||||| ||||||||||||||| |||| ||||||||| |||  |||||| ||||||    
T  35052966 catctataaatttttgaataaggtttggccacatctataaccaacgacaaattcaacaccttttaaaatcaaca 35053039  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 12735846 - 12735901
Alignment:
Q  257 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 312  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12735846 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 12798673 - 12798728
Alignment:
Q  257 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 312  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12798673 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12798728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12735614 - 12735664
Alignment:
Q  35 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 85  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||||||||||    
T  12735614 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12735664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12798441 - 12798491
Alignment:
Q  35 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 85  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||||||||||    
T  12798441 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12798491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 14124553 - 14124662
Alignment:
Q  193 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 292  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  14124553 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 14124642  T
Q  293 aacaaattcagcactgttta 312  Q
    |||||||||| ||| |||||    
T  14124643 aacaaattcaacaccgttta 14124662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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