View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028_low_4 (Length: 413)
Name: NF5028_low_4
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 19508028 - 19508440
Alignment:
| Q |
1 |
aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508028 |
aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct |
19508127 |
T |
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| Q |
101 |
agaaatgatgttattagtatgcctaataagttcatgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt |
200 |
Q |
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| T |
19508128 |
agaaatgatgttattagtatgcctaataagttcgtgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt |
19508227 |
T |
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| Q |
201 |
tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacctccaataatttccataaggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508228 |
tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacctccaataatttccataaggta |
19508327 |
T |
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| Q |
301 |
tgaaaaaataatcagcagcaccatatgttaaattctcacttgcaatcataataggtctattggtaaatgactcttcacaagtctttaaaatttgcttagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19508328 |
tgaaaaaataatcagcagcaccatatgttaaattctcacttgcaatcataataggtctattggtaaatgactcttcacaagtctttaaaatttgtttagc |
19508427 |
T |
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| Q |
401 |
actttcagcagtt |
413 |
Q |
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||||||||||||| |
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| T |
19508428 |
actttcagcagtt |
19508440 |
T |
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