View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028_low_5 (Length: 341)

Name: NF5028_low_5
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028_low_5
NF5028_low_5
[»] chr5 (11 HSPs)
chr5 (16-207)||(30801044-30801237)
chr5 (202-328)||(30800893-30801019)
chr5 (205-277)||(17064801-17064873)
chr5 (109-150)||(30804768-30804809)
chr5 (225-277)||(34208449-34208501)
chr5 (203-277)||(36124452-36124527)
chr5 (219-277)||(28906875-28906933)
chr5 (219-277)||(28943270-28943328)
chr5 (204-277)||(4068036-4068109)
chr5 (232-277)||(36104833-36104878)
chr5 (227-263)||(35796041-35796077)
[»] scaffold0025 (1 HSPs)
scaffold0025 (203-277)||(65729-65804)
[»] chr1 (16 HSPs)
chr1 (225-277)||(38851975-38852027)
chr1 (203-268)||(45416130-45416195)
chr1 (202-277)||(6213473-6213549)
chr1 (205-277)||(17058759-17058831)
chr1 (209-264)||(10842013-10842068)
chr1 (203-277)||(13773221-13773296)
chr1 (219-277)||(15390289-15390348)
chr1 (203-277)||(22563439-22563514)
chr1 (219-277)||(16661322-16661380)
chr1 (203-272)||(32589436-32589506)
chr1 (235-277)||(48897059-48897101)
chr1 (225-277)||(36754422-36754475)
chr1 (213-277)||(40375257-40375322)
chr1 (225-277)||(33133873-33133925)
chr1 (204-264)||(47469029-47469089)
chr1 (225-277)||(50119047-50119099)
[»] scaffold0179 (1 HSPs)
scaffold0179 (219-277)||(6046-6105)
[»] chr4 (13 HSPs)
chr4 (219-277)||(39023244-39023303)
chr4 (203-277)||(55238441-55238516)
chr4 (203-277)||(56479170-56479244)
chr4 (225-277)||(29406432-29406484)
chr4 (203-277)||(626924-626999)
chr4 (219-277)||(45849116-45849175)
chr4 (239-277)||(9735073-9735111)
chr4 (203-277)||(40486494-40486568)
chr4 (204-277)||(55055970-55056043)
chr4 (225-277)||(5497226-5497278)
chr4 (225-277)||(17872162-17872214)
chr4 (214-277)||(26919410-26919474)
chr4 (225-277)||(45312199-45312251)
[»] chr2 (10 HSPs)
chr2 (219-277)||(27913412-27913471)
chr2 (235-277)||(2289696-2289738)
chr2 (203-277)||(13773453-13773528)
chr2 (203-277)||(3286999-3287073)
chr2 (235-271)||(7907491-7907527)
chr2 (225-277)||(27444334-27444386)
chr2 (225-277)||(28819548-28819600)
chr2 (202-277)||(40688581-40688657)
chr2 (225-277)||(41185403-41185455)
chr2 (225-277)||(43214429-43214481)
[»] chr8 (13 HSPs)
chr8 (235-277)||(11710370-11710412)
chr8 (227-277)||(18412633-18412683)
chr8 (203-277)||(23178833-23178908)
chr8 (203-277)||(43085165-43085240)
chr8 (203-277)||(22274554-22274628)
chr8 (203-277)||(24458370-24458444)
chr8 (213-277)||(94453-94518)
chr8 (225-277)||(6511458-6511511)
chr8 (197-277)||(39169532-39169613)
chr8 (174-277)||(7381810-7381909)
chr8 (202-277)||(8265320-8265396)
chr8 (225-273)||(15856453-15856501)
chr8 (225-277)||(43847010-43847062)
[»] chr7 (7 HSPs)
chr7 (225-277)||(47194367-47194419)
chr7 (219-277)||(4232286-4232344)
chr7 (235-277)||(25833641-25833683)
chr7 (220-277)||(27424909-27424966)
chr7 (213-261)||(7778955-7779003)
chr7 (225-277)||(12935815-12935867)
chr7 (225-277)||(21066961-21067013)
[»] chr6 (3 HSPs)
chr6 (225-277)||(17534922-17534974)
chr6 (219-277)||(30248-30307)
chr6 (239-277)||(29284356-29284394)
[»] chr3 (7 HSPs)
chr3 (203-277)||(2007025-2007100)
chr3 (219-277)||(53752642-53752701)
chr3 (203-277)||(44764773-44764847)
chr3 (235-276)||(882475-882516)
chr3 (209-254)||(40192215-40192260)
chr3 (205-277)||(42268839-42268912)
chr3 (225-277)||(44685111-44685163)
[»] scaffold0246 (1 HSPs)
scaffold0246 (203-277)||(24433-24507)
[»] scaffold0690 (1 HSPs)
scaffold0690 (202-277)||(3718-3794)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 30801237 - 30801044
Alignment:
Q  16 gattaaatcattgagtaaaaaagactaatgatttataggattgctaactcatatagtctagtgacaatctatgttttgta--cttattataggattctta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  30801237 gattaaatcattgagtaaaaaagactaatgatttataggattgctaactcatatagtctagtgacaatctatgttttgtatacttattataggattctta 30801138  T
Q  114 aaatacttttactgaaataattatttcattcatatttgattttgataaagtttaaattatatatccccataagcttagttcagttgctagggtt 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  30801137 aaatacttttactgaaataattattttattcatatttgattttgataaagtttaaattatatattcccataaacttagttcagttgctagggtt 30801044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 30801019 - 30800893
Alignment:
Q  202 agggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaannnnnnnnaaattatataattttt 301  Q
    |||||||||| ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||||||||        ||| ||||||||||||    
T  30801019 agggtttgaaccccggacactcaacttctccacatttaattctgtgagttctaaccactagactacttgacaaaaaaaaagtttaaactatataattttt 30800920  T
Q  302 taattctcaattgatttataagaagta 328  Q
     ||||||||||||||||||||||||||    
T  30800919 aaattctcaattgatttataagaagta 30800893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 17064873 - 17064801
Alignment:
Q  205 gtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||| ||||| ||| | |||||| ||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  17064873 gtttgaaccccggacaccccacttctccacatttaattgtgtgagttctagccactaggctacttgaccaaaa 17064801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 30804809 - 30804768
Alignment:
Q  109 tcttaaaatacttttactgaaataattatttcattcatattt 150  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  30804809 tcttaaaatacttttaatgaaataattattttattcatattt 30804768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 34208449 - 34208501
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| |||| |||||||||| ||||||| ||||||||| ||||||||||||    
T  34208449 acttctccacaattaattgtgtgagttctagccactaggctacttgacaaaaa 34208501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 36124452 - 36124527
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||||||| ||||| |||||| |||| ||||| ||||| || |||||||||||| | ||||||||||||    
T  36124452 gggttcgaatcccggacactccacttctccacaatttaactgtgtgagctctaaccactagactacttgacaaaaa 36124527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 28906875 - 28906933
Alignment:
Q  219 cactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||||||||||||||| | |||||||| ||||| ||| ||||||||    
T  28906875 cactccacttctccacatttaattgtgtatgctctaaccaataggctactagacaaaaa 28906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 28943270 - 28943328
Alignment:
Q  219 cactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||||||||||||||| | |||||||| ||||| ||| ||||||||    
T  28943270 cactccacttctccacatttaattgtgtatgctctaaccaataggctactagacaaaaa 28943328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 4068036 - 4068109
Alignment:
Q  204 ggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||| ||| ||||| ||| | |||||| ||||||||||||||| || || |||||||| || ||||||||||||    
T  4068036 ggttcgaaccccggacaccccacttctccacatttaattgtgtgagctccaaccactacgctacttgacaaaaa 4068109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 36104833 - 36104878
Alignment:
Q  232 cacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||    
T  36104833 cacatttaattgtgtgagttctaaccactggactacttgacaaaaa 36104878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 35796041 - 35796077
Alignment:
Q  227 ttcttcacatttaattgtgtaagttctaaccactagg 263  Q
    |||| |||||||||||||||||| |||||||||||||    
T  35796041 ttctccacatttaattgtgtaagctctaaccactagg 35796077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 65804 - 65729
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||||||||||    
T  65804 gggttcgaatcccggacactccacttcttcacaatttaattgtgtgagctctaatcactaggctacttgacaaaaa 65729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 38852027 - 38851975
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  38852027 acttctccacatttaattgtgtgagttctagccactaggctacttgacaaaaa 38851975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 45416195 - 45416130
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaact 268  Q
    ||||| ||||||||| ||| | |||||| ||||||||||||||| |  ||||||||||||||||||    
T  45416195 gggttcgaatcccggacaccccacttctccacatttaattgtgtgaactctaaccactaggcaact 45416130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 6213473 - 6213549
Alignment:
Q  202 agggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||||||||  || | ||||||||||| |||| |||||| ||||||| ||||||| | ||||||||||||    
T  6213473 agggtttgaatcccggataccccacttcttcacaattaaattgtgtgagttctagccactagactacttgacaaaaa 6213549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 17058759 - 17058831
Alignment:
Q  205 gtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||||| ||| | |||||| |||| |||||||||| || |||||||||||||| |||  |||||||    
T  17058759 gtttgaatcccggacaccccacttctccacaattaattgtgtgagctctaaccactaggctactaaacaaaaa 17058831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 10842068 - 10842013
Alignment:
Q  209 gaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggc 264  Q
    ||||||||| ||||| |||||| || ||||||||||||||| |||| |||||||||    
T  10842068 gaatcccggacactccacttctccatatttaattgtgtaagctctatccactaggc 10842013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 13773221 - 13773296
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||||||| ||||| |||||| |||| |||| |||||| || |||| ||||||||| ||||||||||||    
T  13773221 gggttcgaatcccggacactccacttctccacaattaaattgtgtgagctctagccactaggctacttgacaaaaa 13773296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 15390289 - 15390348
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||    
T  15390289 cactccacttctccacaatttaattgtgtgagttctagccactaggctacttgacaaaaa 15390348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 22563439 - 22563514
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||| |||| ||||||||||| || |||| ||||||||| ||||||||||||    
T  22563439 gggttcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggctacttgacaaaaa 22563514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 16661322 - 16661380
Alignment:
Q  219 cactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||||||||||||||| | |||||||| ||||| ||| ||||||||    
T  16661322 cactccacttctccacatttaattgtgtatgctctaaccaataggctactagacaaaaa 16661380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 32589506 - 32589436
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgac 272  Q
    ||||| ||| ||||||||||| |||||| |||| |||| |||||| || |||||||||||||| |||||||    
T  32589506 gggttcgaaccccggtcactccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 32589436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 48897101 - 48897059
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||| || |||||||||||||| ||||||||||||    
T  48897101 atttaattgtgtgagctctaaccactaggctacttgacaaaaa 48897059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 36754422 - 36754475
Alignment:
Q  225 acttcttcacatttaat-tgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||||    
T  36754422 acttctacacatttaatatgtgtgagttctaaccattaggctacttgacaaaaa 36754475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 40375322 - 40375257
Alignment:
Q  213 cccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||| |||||| |||| |||| |||||| || |||||||||||||| ||||||||||||    
T  40375322 cccggacactctacttctccacaattaaattgtgtgagctctaaccactaggctacttgacaaaaa 40375257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 33133925 - 33133873
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||| |||||||||||| ||||||| ||||||| | ||||||| ||||    
T  33133925 acttcttcatatttaattgtgtgagttctagccactagactacttgactaaaa 33133873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 47469089 - 47469029
Alignment:
Q  204 ggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggc 264  Q
    |||| ||| ||||| ||| | |||||| ||||||||||||||| || ||||||||||||||    
T  47469089 ggttcgaaccccggacaccccacttctccacatttaattgtgtgagctctaaccactaggc 47469029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 50119047 - 50119099
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| || |||| ||||| ||| ||||||||||||    
T  50119047 acttctccacatttaattgtgtgagctctagccactgggctacttgacaaaaa 50119099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 6046 - 6105
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||    
T  6046 cactccacttcttcacaatttaattgtgtgagctctaaccactaggctacttgacaaaaa 6105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 39023244 - 39023303
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  39023244 cactccacttctccacaatttaattgtgtaagttctagccactaggctacttgacaaaaa 39023303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 55238516 - 55238441
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||| ||  ||||| |||| || ||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  55238516 gggtttgaatctcgaacactccacttttttacaatttaattgtgtaagttctagccactaggctacttgacaaaaa 55238441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 56479244 - 56479170
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||| | ||||||| ||||||| |||| | ||||||||||||||||| ||||||||||||    
T  56479244 gggttcgaaccccggacaccccacttctttacatttagttgtctgagttctaaccactaggctacttgacaaaaa 56479170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 29406432 - 29406484
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| || || ||||||||||||||| ||||||||    
T  29406432 acttctccacatttaattgtgtgagctccaaccactaggcaactagacaaaaa 29406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 626999 - 626924
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||| |||| |||| |||||| || |||||||||||||| ||||||||||||    
T  626999 gggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctaaccactaggctacttgacaaaaa 626924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 45849116 - 45849175
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||    
T  45849116 cactccacttctccacaatttaattgtgtgagttctagccactaggctacttgacaaaaa 45849175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 9735111 - 9735073
Alignment:
Q  239 aattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  9735111 aattgtgtaagctctaaccactaggctacttgacaaaaa 9735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 40486494 - 40486568
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||||||||||||| ||||| || |||| ||||||||| ||| ||| ||||    
T  40486494 gggttcgaaccccggacactccacttcttcacatttaaatgtgtgagctctagccactaggctactagaccaaaa 40486568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 55055970 - 55056043
Alignment:
Q  204 ggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||| ||| ||||| ||| | |||||| ||||||||||||||| || || |||||||| || ||||||||||||    
T  55055970 ggttcgaaccccggacacgccacttctccacatttaattgtgtgagctccaaccactacgctacttgacaaaaa 55056043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 5497278 - 5497226
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||| ||||||||||||||||| || ||||||||||| |  ||||||||||||    
T  5497278 actttttcacatttaattgtgtgagctctaaccactaagttacttgacaaaaa 5497226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 17872162 - 17872214
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| || |||||||||||  ||||||| ||||||||| ||||||||||||    
T  17872162 acttctccatatttaattgtgcgagttctagccactaggctacttgacaaaaa 17872214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 26919474 - 26919410
Alignment:
Q  214 ccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||| ||||| ||||||||||| |||| |||||| || |||| ||||||||| ||||||||||||    
T  26919474 ccggacactccacttcttcacaattaaattgtgtgagctctagccactaggctacttgacaaaaa 26919410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 45312251 - 45312199
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||| |||||||||||| || |||| ||| ||||| ||||||||||||    
T  45312251 acttcttcatatttaattgtgtgagctctagccaataggctacttgacaaaaa 45312199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 27913471 - 27913412
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||||||||    
T  27913471 cactccacttctccacaatttaattgtgtaagctctaaccactaggctacttgacaaaaa 27913412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 2289696 - 2289738
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  2289696 atttaattgtgtgagttctaaccactaggctacttgacaaaaa 2289738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 13773453 - 13773528
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||| |||| |||| |||||| || |||||||||||||| ||||||||||||    
T  13773453 gggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctaaccactaggctacttgacaaaaa 13773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 3287073 - 3286999
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| |||||  |||| |||||| ||||||||||||||| || |||| ||||||| | ||||||||||||    
T  3287073 gggttcgaaccccggatactccacttctccacatttaattgtgtgagctctagccactagactacttgacaaaaa 3286999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 7907527 - 7907491
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttga 271  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  7907527 atttaattgtgtgagttctaaccactaggctacttga 7907491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 27444334 - 27444386
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||||||| ||||| || ||||| |||||| | ||||||||||||    
T  27444334 acttcttcacatttaaatgtgtgagctctaatcactagactacttgacaaaaa 27444386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 28819548 - 28819600
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| |||||||||||||||||| |  ||||||||||| ||| ||||||||    
T  28819548 acttctccacatttaattgtgtaagctacaaccactaggctactagacaaaaa 28819600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 40688657 - 40688581
Alignment:
Q  202 agggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||| ||||| ||||| |||||| |||| |||| |||||| || |||||||||||||| |||||| |||||    
T  40688657 agggttcgaaccccggacactctacttctccacaattaaattgtgtgagctctaaccactaggctacttgaaaaaaa 40688581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 41185455 - 41185403
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||| | || |||||||||||| |||||| |||||||    
T  41185455 acttctgcacatttaattgtatgagctctaaccactagacaacttaacaaaaa 41185403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 43214429 - 43214481
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||| ||||||||||| || |||||||||||||| ||| ||||||||    
T  43214429 acttctccacgtttaattgtgtgagctctaaccactaggctactagacaaaaa 43214481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 11710370 - 11710412
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  11710370 atttaattgtgtgagttctaaccactaggctacttgacaaaaa 11710412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 18412633 - 18412683
Alignment:
Q  227 ttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  18412633 ttcttcacatttaattatgtgagttctaaccactaggcaactagaccaaaa 18412683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 23178908 - 23178833
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| ||||||||||| ||||||||||| || |||| ||||||||| ||||||| ||||    
T  23178908 gggttcgaaccccggacactccacttcttcacaatttaattgtgtgagctctagccactaggctacttgaccaaaa 23178833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 43085240 - 43085165
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||| |||| |||| ||||||||| |||||||||||||| ||||||| ||||    
T  43085240 gggttcgaaccccggacactccacttctccacaattaaattgtgtaagctctaaccactaggctacttgaccaaaa 43085165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 22274628 - 22274554
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||| | |||||| |||| |||||||||| || |||| ||||||||| ||||||||||||    
T  22274628 gggttcgaaccccggacaccccacttctccacaattaattgtgtgagctctagccactaggctacttgacaaaaa 22274554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 24458370 - 24458444
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| |||||  ||||||||||| ||||||||||||||| || |||| ||||||| | ||||||| ||||    
T  24458370 gggttcgaaccccggatactcaacttctccacatttaattgtgtgagctctagccactagactacttgaccaaaa 24458444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 94518 - 94453
Alignment:
Q  213 cccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||| |||||| |||| |||| |||||| || |||||||||||||| ||||||||||||    
T  94518 cccggacactccacttctccacaattaaattgtgtgagctctaaccactaggctacttgacaaaaa 94453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 6511511 - 6511458
Alignment:
Q  225 acttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||| ||||||||||| || |||||||||||  ||||||||||||||    
T  6511511 acttcttcacaatttaattgtgtgagctctaaccactaaacaacttgacaaaaa 6511458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 39169532 - 39169613
Alignment:
Q  197 ttgctagggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||| ||| ||| | |||||||||||| |||| ||||||||||| || |||| ||||||||| ||||||| ||||    
T  39169532 ttgctggggttcgaaccccagacactcaacttctccacaatttaattgtgtgagctctagccactaggctacttgaccaaaa 39169613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 7381909 - 7381810
Alignment:
Q  174 atatccccataagcttagttcagttgctagggtttgaatcccggtcactcaacttcttcacattta-attgtgtaagttctaaccactaggcaacttgac 272  Q
    |||||||||| ||||||||| |||||     ||| ||||||||| ||||| |||||| |||| ||| ||||||| ||||||| |||| || | |||||||    
T  7381909 atatccccatgagcttagtttagttg-----gttcgaatcccggacactccacttctccacaattatattgtgtgagttctagccaccagactacttgac 7381815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 8265320 - 8265396
Alignment:
Q  202 agggtttgaatcccggtcactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||| ||||| ||||| |||||| |||| ||||||||||| || |||| ||||||||| ||||||| ||||    
T  8265320 agggttcgaaccccggacactccacttctccacaatttaattgtgtgagctctagccactaggctacttgaccaaaa 8265396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 15856501 - 15856453
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgaca 273  Q
    |||||| ||||||||||||||| || |||||||||||||| ||| ||||    
T  15856501 acttctccacatttaattgtgtgagctctaaccactaggctactagaca 15856453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 43847010 - 43847062
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| || |||| ||||||||| ||| ||||||||    
T  43847010 acttctccacatttaattgtgtgagctctagccactaggctactagacaaaaa 43847062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 47194419 - 47194367
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| |||| |||||||||| ||||||| ||||||||| ||||||||||||    
T  47194419 acttctccacaattaattgtgtgagttctagccactaggctacttgacaaaaa 47194367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 4232344 - 4232286
Alignment:
Q  219 cactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||||||| ||||||||||| |||||||  |||||| | ||||||||||||    
T  4232344 cactccacttcttcacgtttaattgtgtgagttctagtcactagactacttgacaaaaa 4232286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 25833641 - 25833683
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||    
T  25833641 atttaattgtgtaagctctagccactaggctacttgacaaaaa 25833683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 27424909 - 27424966
Alignment:
Q  220 actcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||| |||||| ||||||||||||||| || |||| ||||||||| ||||||| ||||    
T  27424909 actccacttctccacatttaattgtgtgagctctagccactaggctacttgaccaaaa 27424966  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 7779003 - 7778955
Alignment:
Q  213 cccggtcactcaacttcttcacatttaattgtgtaagttctaaccacta 261  Q
    ||||| ||||| |||||| ||||||||||||||| ||||||| ||||||    
T  7779003 cccggacactccacttctccacatttaattgtgtgagttctagccacta 7778955  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 12935815 - 12935867
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| || |||| ||||||||| ||| ||||||||    
T  12935815 acttctccacatttaattgtgtgagctctagccactaggctactagacaaaaa 12935867  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 21066961 - 21067013
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||  || |||| ||||||||| ||||||||||||    
T  21066961 acttctccacatttaattgtgcgagctctagccactaggctacttgacaaaaa 21067013  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 17534922 - 17534974
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  17534922 acttctccacatttaattgtgtgagttctagccactaggctactagacaaaaa 17534974  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 30307 - 30248
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||||    
T  30307 cactccacttcttcacaatttaattgtgtgagttctagccactaggctacttgaccaaaa 30248  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 29284356 - 29284394
Alignment:
Q  239 aattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  29284356 aattgtgtaagttctagccactaggctacttgacaaaaa 29284394  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 2007100 - 2007025
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||| ||||| ||||| |||||| |||| |||| |||||| || |||| ||||||||| ||||||||||||    
T  2007100 gggtttgaaccccggacactccacttctccacaattaaattgtgtgagctctatccactaggctacttgacaaaaa 2007025  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 53752701 - 53752642
Alignment:
Q  219 cactcaacttcttcaca-tttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||    
T  53752701 cactccacttctccacaatttaattgtgtgagttctagccactaggctacttgacaaaaa 53752642  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 44764773 - 44764847
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||| ||||||||||||||| || |||| ||||||||| | | ||||||||    
T  44764773 gggttcgaaccccggacactccacttctccacatttaattgtgtgagctctagccactaggctattagacaaaaa 44764847  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 882475 - 882516
Alignment:
Q  235 atttaattgtgtaagttctaaccactaggcaacttgacaaaa 276  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  882475 atttaattgtgtgagttctaaccactaggctacttaacaaaa 882516  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 40192215 - 40192260
Alignment:
Q  209 gaatcccggtcactcaacttcttcacatttaattgtgtaagttcta 254  Q
    ||||||||| ||||| |||||| ||||||||||||||| |||||||    
T  40192215 gaatcccggacactccacttctccacatttaattgtgtgagttcta 40192260  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 42268839 - 42268912
Alignment:
Q  205 gtttgaatcccggtcactcaacttcttcac-atttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||   || |||||||||||||| |||||| |||||    
T  42268839 gtttgaatcccggacactccacttctccacaatttaattgtacgagctctaaccactaggctacttgaaaaaaa 42268912  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 44685163 - 44685111
Alignment:
Q  225 acttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| |||| |||||||||| ||||||| ||||||| | ||||||||||||    
T  44685163 acttctccacaattaattgtgtgagttctagccactagactacttgacaaaaa 44685111  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 24433 - 24507
Alignment:
Q  203 gggtttgaatcccggtcactcaacttcttcacatttaattgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    ||||| ||| ||||| ||||| |||||||||||||||| ||||| || |||| ||||||||| ||| ||| ||||    
T  24433 gggttcgaaccccggacactccacttcttcacatttaaatgtgtgagctctagccactaggctactagaccaaaa 24507  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 3718 - 3794
Alignment:
Q  202 agggtttgaatcccggtcactcaacttcttcacatttaa-ttgtgtaagttctaaccactaggcaacttgacaaaaa 277  Q
    |||||| ||| ||||| ||||| |||||| |||| |||| |||||| || |||| ||||||||| ||||||||||||    
T  3718 agggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactaggctacttgacaaaaa 3794  T

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