View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028_low_6 (Length: 319)
Name: NF5028_low_6
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 21924098 - 21924422
Alignment:
| Q |
1 |
tttacttctggatttcaaaaaatggtttaaagctcaacaaattggttttatttttgagattgtatgtattttcagcattaagtcgtgaaataaatttggg |
100 |
Q |
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| T |
21924098 |
tttacttctagatttcaaagaatggattaaagctcaacaaattggttttatttttgagattgtatgtatgttcagcattaagttgtgaaataaatttggg |
21924197 |
T |
|
| Q |
101 |
gattcaaaatacttatgtgctgctctattttccctacagcaagttattttcagtattaaaaggcaagagtttgtgctaattcgagcagaaattgttttcg |
200 |
Q |
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| T |
21924198 |
gattcaaaatacttatgtgctgctctattttttctgcagcaagtta-tttcagtattaaaaggaaagagtttgtactaattcgagcagaaattgttttcg |
21924296 |
T |
|
| Q |
201 |
ttcagagcagaaattattttcagacat-----------------attattcaacagtagcagattactcttcgtgtatatcttgaacggtgcagccattt |
283 |
Q |
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|||||||||| || ||| || | || |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
21924297 |
ttcagagcagttgttgtttgcaaagatgtttaggagtttcagacattattcagcagtagcagattactcttcgtgtatgtcttgaatggtgcagccattt |
21924396 |
T |
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| Q |
284 |
tccccccaattttgtatcagtctctg |
309 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21924397 |
tccccccaattttgtatcagtctctg |
21924422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 39483861 - 39483770
Alignment:
| Q |
218 |
tttcagacatattattcaacagtagcagattactcttcgtgtatatcttgaacggtgcagccattttccccccaattttgtatcagtctctg |
309 |
Q |
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| T |
39483861 |
tttcagacatattatttaacagtagcagattactcttcgtgtatatcttgaacggtgcagccattttccccccaattttgtatcagtctctg |
39483770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 26844085 - 26844216
Alignment:
| Q |
11 |
gatttcaaaaaatggtttaaagctcaacaaattggttttatttttgagattgtatgtattttcagcattaagtcgtgaaataaatttggggattcaaaat |
110 |
Q |
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||||||||||||||| ||||||||||| ||||| |||||| ||||||||| |||||||| ||||||| || |||||||| |||||||||| |
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| T |
26844085 |
gatttcaaaaaatggcttaaagctcaataaatta-----attttttagattgtat----tttcagcaa-aagtcgtaaactaaatttgaggattcaaaac |
26844174 |
T |
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| Q |
111 |
acttatgtgctgctctattttccctacagcaagttattttca |
152 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
26844175 |
acttatgtgctgctctattttccctgcagtaagttattttca |
26844216 |
T |
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