View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5028_low_7 (Length: 251)

Name: NF5028_low_7
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5028_low_7
NF5028_low_7
[»] chr2 (9 HSPs)
chr2 (1-234)||(12258642-12258879)
chr2 (9-227)||(7542103-7542325)
chr2 (1-228)||(12245467-12245698)
chr2 (9-230)||(12234563-12234788)
chr2 (38-228)||(11999283-11999477)
chr2 (9-230)||(14703282-14703507)
chr2 (9-110)||(16662061-16662162)
chr2 (9-230)||(16657586-16657811)
chr2 (1-96)||(43625424-43625519)
[»] chr4 (2 HSPs)
chr4 (9-235)||(35132326-35132547)
chr4 (9-102)||(30775258-30775351)
[»] chr7 (5 HSPs)
chr7 (1-54)||(1301514-1301567)
chr7 (188-230)||(17267813-17267855)
chr7 (157-230)||(8616555-8616628)
chr7 (9-70)||(8559371-8559432)
chr7 (1-54)||(8659417-8659470)
[»] chr5 (1 HSPs)
chr5 (9-230)||(28219792-28220017)
[»] chr8 (2 HSPs)
chr8 (1-72)||(12528540-12528611)
chr8 (9-230)||(43744690-43744915)
[»] chr1 (1 HSPs)
chr1 (9-54)||(4678627-4678672)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12258642 - 12258879
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12258642 ccttggaggagaggactttgataatagaatggtgagttactttgtagaagagttcaagagaaagaacaaagtagatataagtggaaatccaagagctttg 12258741  T
Q  101 aggagattgaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgattttt 196  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12258742 aggagattgaaaacagcttgtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgattttt 12258841  T
Q  197 ctgcgtcaatcaatcgtgccaagtttgaggaaataaat 234  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12258842 ctgcatcaatcaatcgtgccaagtttgaggaaataaat 12258879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 7542325 - 7542103
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||| ||||||||||||||||||| ||  ||||||||| ||||||| ||||||||||||||||| || || ||||| ||||||| ||| |||||||| ||    
T  7542325 gagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaacaaagtggacattagtgggaatccaaaagccttgaggaggtt 7542226  T
Q  109 gaaaac----agtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
    || |||     ||||||| |||||||||||||||||||  ||||||||||| ||||||||| |||||||||||| | | |||||||| |||||| | ||     
T  7542225 gagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcg 7542126  T
Q  205 atcaatcgtgccaagtttgagga 227  Q
    |||||| | ||||||||||||||    
T  7542125 atcaatagggccaagtttgagga 7542103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12245467 - 12245698
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttg 100  Q
    ||||||| ||||||| ||||||||||||||||| |  ||||||| | | ||||| ||||||||||||||| | ||||| |||| || | ||| ||| |||    
T  12245467 ccttggaggagaggattttgataatagaatggtaaactactttgcacaggagttcaagagaaagaacaaattggatattagtgcaagttcaaaagccttg 12245566  T
Q  101 aggagattgaaaac----agtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgattttt 196  Q
    |||||||||| |||     ||||||| |||||||||  |||||| | |||||||||||||||||||||| |||||||||||| | | |||||||||||||    
T  12245567 aggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctttatttcaaggcattgattttt 12245666  T
Q  197 ctgcgtcaatcaatcgtgccaagtttgaggaa 228  Q
    || | || |||||||| || ||||||||||||    
T  12245667 cttcatccatcaatcgggcaaagtttgaggaa 12245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 12234788 - 12234563
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||||||||||||||| |||||||| |  ||| |||   ||||||| || |||||||| ||||| || || ||||||||||||| ||| |||||||| ||    
T  12234788 gagaggactttgataacagaatggtaaactaccttgctcaagagttcaatagaaagaaaaaagtggacatgagtggaaatccaaaagccttgaggaggtt 12234689  T
Q  109 gaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
     | ||| |    |||||| |||||||||||| | ||||  |||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| | ||     
T  12234688 aagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggtagattctttatttgaaggcattgatttttcttcatcg 12234589  T
Q  205 atcaatcgtgccaagtttgaggaaat 230  Q
    |||||| | |||||||||||||||||    
T  12234588 atcaatagggccaagtttgaggaaat 12234563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 11999477 - 11999283
Alignment:
Q  38 tactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagat 133  Q
    ||||||||| ||||||| |||| ||||||| |||| ||||| ||||||| | ||| ||| |||||||| |||| ||| |    |||||| |||||||||     
T  11999477 tactttgtacaagagttcaagataaagaacgaagtggatattagtggaagttcaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaa 11999378  T
Q  134 cactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaa 228  Q
     ||| || | |||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| || ||||||||||||    
T  11999377 tactatcatttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaa 11999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 14703507 - 14703282
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||||||||| ||||| ||||||||||  ||||||||  ||||||| |||||||| |||| | | || || ||||||||||||| ||| || ||||| ||    
T  14703507 gagaggacttcgataacagaatggtgaactactttgttcaagagttcaagagaaaaaacagattggacattagtggaaatccaaaagccttaaggagctt 14703408  T
Q  109 gaaaac----agtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
    || |||     | ||||| ||||||||| |||||||||  |  ||||| || ||||||||| ||||| |||||| | |  ||||||| |||||| | ||     
T  14703407 gagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttatttcaatgcattgacttttcttcatcg 14703308  T
Q  205 atcaatcgtgccaagtttgaggaaat 230  Q
    |||||| | ||||||||||| |||||    
T  14703307 atcaatagggccaagtttgaagaaat 14703282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 16662061 - 16662162
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||||||||||||||| |||||| |||  ||||||||  |||| || || || ||||||||||| ||||| | | | ||||||||||| |||||||| ||    
T  16662061 gagaggactttgataacagaatgttgaactactttgtgaaagaatttaataggaagaacaaagtggatatcactaggaatccaagagccttgaggaggtt 16662160  T
Q  109 ga 110  Q
    ||    
T  16662161 ga 16662162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 16657586 - 16657811
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||||||||||||||| |||| |||||  ||||||||||| |||||  | |  ||||| || || || |||||||| ||  ||||||| |||||||| ||    
T  16657586 gagaggactttgataacagaacggtgaactactttgtagaggagtttcaaaagaagaataaggtggacataagtgggaactcaagagccttgaggaggtt 16657685  T
Q  109 gaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
    || ||| |    |||||| ||||| ||  |||| |||| |  | ||||  | ||| ||||| |||||||||||| | | || ||||| |||||| | |||    
T  16657686 gagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctttatttcagggaattgacttttcttcatca 16657785  T
Q  205 atcaatcgtgccaagtttgaggaaat 230  Q
    ||||  ||||||||||||||||||||    
T  16657786 atcacccgtgccaagtttgaggaaat 16657811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 43625519 - 43625424
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagc 96  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||| |||||| ||  |||  |||||||| || ||||| | ||||||  |||||||    
T  43625519 ccttggaggagaggactttgatgatagaatggtgaactactttgcagaagaatttgagaagaagaacaatgtggatattattggaaactcaagagc 43625424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 35132547 - 35132326
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||||| |||||||||||||||||||| || ||||| ||| ||| ||| ||||| |   |    
T  35132547 gagaggactttgataacagaatggtgaactactttgtacaagagttcaagagaaagaacaaagtagacattagtgggaattcaaaagccttgagaac--t 35132450  T
Q  109 gaaaacagtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatca 208  Q
    |    | |  |||| ||||| |||||||||||||  ||||||||||| | ||||||  |||||||||||| | | ||||||||||||||| | |||||||    
T  35132449 gc---ctgctagagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcatcaatca 35132353  T
Q  209 atcgtgccaagtttgaggaaataaatg 235  Q
    |||| ||||||||||||||||| ||||    
T  35132352 atcgcgccaagtttgaggaaatgaatg 35132326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 30775351 - 30775258
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgag 102  Q
    |||||||||||||||| |||||| ||| |||||||||||| || || ||||  |||||||| || || || |  || |||||||||||||||||    
T  30775351 gagaggactttgataacagaatgttgaattactttgtagaggaatttaagacgaagaacaacgtggacattaccgggaatccaagagctttgag 30775258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1301567 - 1301514
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagtt 54  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  1301567 ccttggaggagaggactttgataatagaatggtgagctactttgtagaggagtt 1301514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 17267855 - 17267813
Alignment:
Q  188 ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaat 230  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  17267855 ttgatttttcttcgtcaatcactcgtgccaagtttgaggaaat 17267813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 8616628 - 8616555
Alignment:
Q  157 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaat 230  Q
    ||||||||||| |||| ||||||||| ||||| ||||| ||| | ||||||| |||||  ||||||||||||||    
T  8616628 actattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaat 8616555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 8559432 - 8559371
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaa 70  Q
    |||||||||||||||| ||||||||||   |||||||| |||||||  |||| |||||||||    
T  8559432 gagaggactttgataacagaatggtgaaacactttgtaaaagagtttgagaggaagaacaaa 8559371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8659470 - 8659417
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagtt 54  Q
    ||||||| |||||||||||||||  ||||||||||  ||||||||||| |||||    
T  8659470 ccttggaggagaggactttgatagcagaatggtgaactactttgtagaggagtt 8659417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 28220017 - 28219792
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    ||||||||||||||| ||| |||||||  ||||| | ||| ||||| ||||  |||||||| || || || | ||||||  ||||||| || ||||| ||    
T  28220017 gagaggactttgatagtaggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaactcaagagccttaaggaggtt 28219918  T
Q  109 gaaaacagtg----agagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
    || ||||| |    |||| ||||||||  |||| |||| |  |||||| || || |||||| |||||||||||| ||| ||||||||||| | | | |||    
T  28219917 gagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattgatttcttttcatca 28219818  T
Q  205 atcaatcgtgccaagtttgaggaaat 230  Q
    || | |||||| ||||||||||||||    
T  28219817 attactcgtgctaagtttgaggaaat 28219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12528611 - 12528540
Alignment:
Q  1 ccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagt 72  Q
    ||||||| ||||||||||||||||| ||||||||| | |||||||  ||||||| ||||| |||||||||||    
T  12528611 ccttggaggagaggactttgataatcgaatggtgaatcactttgtgaaagagtttaagaggaagaacaaagt 12528540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 43744915 - 43744690
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagatt 108  Q
    ||||||| ||||||||||| |||||||  ||||| | ||| ||||| ||||  |||||||| || || || | |||||| |||||||| || ||||| ||    
T  43744915 gagaggattttgataataggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaacccaagagcattaaggaggtt 43744816  T
Q  109 gaaaacagt----gagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtca 204  Q
    || |||||     || || ||||||||  || | |||| |  ||||||  | ||||||||| |||||||||||| ||| ||||||||||| | | |  ||    
T  43744815 gagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttatttgagggcattgatttctttacaaca 43744716  T
Q  205 atcaatcgtgccaagtttgaggaaat 230  Q
    |||| |||| | ||||||||||||||    
T  43744715 atcactcgtactaagtttgaggaaat 43744690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 4678627 - 4678672
Alignment:
Q  9 gagaggactttgataatagaatggtgagttactttgtagaagagtt 54  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||    
T  4678627 gagaggactttgataacagaatggtgaactactttgtagaggagtt 4678672  T

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