View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028_low_8 (Length: 250)
Name: NF5028_low_8
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19508506 - 19508717
Alignment:
| Q |
1 |
tttgtaaagtgatttatgaagaagtgatctaagatatggtgcatgtcctaagattggaaatgaaattggtggtccaggtggtaatttgtaacaaacggat |
100 |
Q |
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| T |
19508506 |
tttgtaaagtgatttatgaagaagtgatctaagatatggtgcatgtcctaagattggaaatgaaattggtggtccaggtggtaatttgtaacacactgat |
19508605 |
T |
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| Q |
101 |
ttcttgaaaagtgacctaatgaaaatacttgaaatgaaccataataggaataatactacgtagccttggatttcaagcatggttagttgagtacttgatt |
200 |
Q |
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| T |
19508606 |
ttcttgaaaagtgacctaatgaaaatacttgaaatgaaccataataggaataatactacgtagccttggatttcaagcatg----gttgagtacttgatt |
19508701 |
T |
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| Q |
201 |
tggtaattggtatgac |
216 |
Q |
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| T |
19508702 |
tggtaattggtgtgac |
19508717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 14293638 - 14293806
Alignment:
| Q |
5 |
taaagtgatttatgaagaagtgat---ctaagatatggtgcatgtcctaagattggaaatgaaattggtggtccaggtggtaatttgtaacaaacggatt |
101 |
Q |
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|||| |||||||||||| |||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
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| T |
14293638 |
taaaatgatttatgaaggagtgataatctaagataaggtgcatgccctaagattggaaacgaaattggtggtccaggtggtaatttgtaatacacggatt |
14293737 |
T |
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| Q |
102 |
tcttgaaaagtgacctaatgaaaatacttgaaatgaaccataataggaataatactacgtagccttgga |
170 |
Q |
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| T |
14293738 |
ttttgaaaagtgacctaatgaaaatagttgaaatgaaccccaataggaataatattacgtagccttgga |
14293806 |
T |
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