View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5028_low_9 (Length: 239)
Name: NF5028_low_9
Description: NF5028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5028_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 14046009 - 14046226
Alignment:
| Q |
22 |
tgtcttggaagatttgtgcgtagcgagtggtagacactgctgtgaactgtttctcttgttgggtctatgctaagaggatcggagtctgatttagaggtgt |
121 |
Q |
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| T |
14046009 |
tgtcttggaagattggtgcgcagagagtggtatacgctgctgtgaactgtttctctggccgggtccatgcttagaggatcggagtctgtttttggggtgt |
14046108 |
T |
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| Q |
122 |
atatccaggttcctccaacacggttgttcttctcgaaaactacgacgttgtggccttcttgatgtagctccttggcggcgacgaggccagagactccggc |
221 |
Q |
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| T |
14046109 |
atatccaggttcctcccacacggttgttcttctcgaaaacaacgacgttgtggccttcttgctgtagctccttggcggcgacgaggccggagactccggc |
14046208 |
T |
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| Q |
222 |
gccgatgactgcaacttt |
239 |
Q |
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| T |
14046209 |
accgatgactgcaacttt |
14046226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 14034259 - 14034038
Alignment:
| Q |
18 |
gatatgtcttggaagatttgtgcgtagcgagtggtagacactgctgtgaactgtttctcttgttgggtctatgctaagaggatcggagtctgatttagag |
117 |
Q |
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|||||||||||||||||| |||||||| ||| |||| || ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
14034259 |
gatatgtcttggaagattggtgcgtagtgagaggtacacgctgctgtgaactgtttctcgggttggatcaatgctaagaggatcggagtctgatttagag |
14034160 |
T |
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| Q |
118 |
gtgtatatccaggttcctccaacacggttgttcttctcgaaaactacgacgttgtggccttcttgatgtagctccttggcggcgacgaggccagagactc |
217 |
Q |
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| T |
14034159 |
gtgtatatccaggttcctccgacacggttgttcttctcgaaaacgatgacgttgtggccttcttgctgtagctccttggcagcaaccataccggaaactc |
14034060 |
T |
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| Q |
218 |
cggcgccgatgactgcaacttt |
239 |
Q |
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| T |
14034059 |
cggcgccgatgactgcaacttt |
14034038 |
T |
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