View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029-Insertion-1 (Length: 1080)
Name: NF5029-Insertion-1
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 889; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 8 - 1008
Target Start/End: Complemental strand, 10259898 - 10258888
Alignment:
| Q |
8 |
gtatgcatatgcaaaagaatggatagttgaagtacgtacccaaaagttccggcaacatctgtgcaggttatagctgatgacgagattgatgcccatttcg |
107 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
10259898 |
gtatgcatatgcaaaagaatggatggttgaagtacgtacccaaaagttccggcaacatctgtgcaggttatagatgatgacgaggttgatgcccatttcg |
10259799 |
T |
|
| Q |
108 |
caagtccaaagtcagagagctatagaaaattgacagaaaaacatgagtcctaagaagtacaaatagttcaaaatattgatgttagtcaatagagagataa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10259798 |
caagtccaaagtcagagagctatagaaaatcgacagaaaaacatgagtcctaagaagtacaaatagtttaaaatattgatgttagtcaatagagagataa |
10259699 |
T |
|
| Q |
208 |
attacctgaggttcaaaatcctcagataataacacatttgatgattttacatcacgatggatcacaggttggtcactgttattatgcagatactccaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10259698 |
attacctgaggttcaaaatcctcagataataacacatttgatgattttacatcacgatggatcacaggttggtcactgttattatgcagatactccaaag |
10259599 |
T |
|
| Q |
308 |
cctcagcaacgcccattgccaccttatatctctcagtccaaccaaactcgagcgaatttttcttactacctattttggcattgagcaaaatgaagtaaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10259598 |
cctcagcaacgcccattgccaccttatatctctcagtccaacctaactcgagcgaatttttcttactacctattttggcattgagcaaaatgaagtaaat |
10259499 |
T |
|
| Q |
408 |
aatcctgaaagcaatttcatattgattgataaaagatagtaaattgcgtacatatttgtcctatttatatagagctcaatcgaaccaactaatcaaataa |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10259498 |
aatcctgaaagcaatttcatattgattgataaaagatagtaaattgcgtacatatttgtcctatttatatagagctcaatcgaaccaactaatgaaataa |
10259399 |
T |
|
| Q |
508 |
ctaactcctaacaaaataactatcttaacaaaagctaaggtgaatattgtaacggtgttgaacatattgcgtaccctgaaggttttgttcaaggctccct |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10259398 |
ctaactcctaacaaaataactatcttaacaaaagctaaggtgaatattgtaacggtgttgaacatattgcgtaccctgaaggttttgttcaaggctccct |
10259299 |
T |
|
| Q |
608 |
cttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgatgtttttgtgatgcaaagcggtgataatttcta |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10259298 |
cttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgatgtttttgtgatgcaaagcggtgataatttcta |
10259199 |
T |
|
| Q |
708 |
tctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcagcctttataaacctgactact |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
10259198 |
tctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcaacctttataaacccgactact |
10259099 |
T |
|
| Q |
808 |
tcctcctttaccaatcaaattttctgaaataaaaatcacttaggtaaataaaccatgtcaaaaataaaaaccactttcggac-aatgaa--tcac-gtca |
903 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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|
| T |
10259098 |
tcctcctttaccaatcaaattttctgaaatcaaaatcacttaggtaaataaaccatgtcaaaaataaaaaccactttcggacaaatgaaatccacggtca |
10258999 |
T |
|
| Q |
904 |
aaaaatc-aaatacacaccc-gcaaga--gttgatgttgctgatacaagttcttggtacttaaacaatctgcaagtagatgagta-ttctcatg-aggcc |
997 |
Q |
| |
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||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
10258998 |
aaaaatcaaaatacacacccggcaagaagtttgatgttgctgatacaagttcttggtacttaaacaatctgcaagtagatgagtatttctcatgaaggcc |
10258899 |
T |
|
| Q |
998 |
ctccaattctt |
1008 |
Q |
| |
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||| ||||||| |
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|
| T |
10258898 |
ctctaattctt |
10258888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 7e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 595 - 837
Target Start/End: Complemental strand, 40377952 - 40377710
Alignment:
| Q |
595 |
ttcaaggctccctcttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgatgtttttgtgatgcaaagcg |
694 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || |||||| ||| || |||||||| || ||||| ||||| ||||||||||||||||| | | |
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| T |
40377952 |
ttcaaggcttcctcttgataagaaatcatagaccaagagtagattgccattctcgaagcagaacccgatgagggaaataatgtttttgtgatgcaatgtg |
40377853 |
T |
|
| Q |
695 |
gtgataatttctatctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcagcctttat |
794 |
Q |
| |
|
||||| |||||||| || |||| |||||| ||||||||||||| |||||||||| |||||| ||||||||||| || |||||| | ||||||||| | |
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|
| T |
40377852 |
gtgatgatttctatttccaaaagaaactctttcaaaacatcatacgaaggctttaggatcttgacagcaagttctttgccatcacgaaggcagcctcggt |
40377753 |
T |
|
| Q |
795 |
aaacctgactacttcctcctttaccaatcaaattttctgaaat |
837 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
40377752 |
aaaccttactacttcctcctttcccaataaaattttctgaaat |
40377710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 210 - 357
Target Start/End: Complemental strand, 40378226 - 40378079
Alignment:
| Q |
210 |
tacctgaggttcaaaatcctcagataataacacatttgatgattttacatcacgatggatcacaggttggtcactgttattatgcagatactccaaagcc |
309 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||| ||||| || || || ||| ||||||||| |||||||| |
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| T |
40378226 |
tacctgaggttcaaaatcttcagatagtaatacattggatgattttacatcccgatgaatcacgggatgatcgtctttacaatgcagatattccaaagct |
40378127 |
T |
|
| Q |
310 |
tcagcaacgcccattgccaccttatatctctcagtccaaccaaactcg |
357 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||||||||||| |
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|
| T |
40378126 |
tcagcaacgcctgttgcaaccttatatctctgtgtccaaccaaactcg |
40378079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1008
Target Start/End: Complemental strand, 40377613 - 40377533
Alignment:
| Q |
930 |
ttgatgttgctgatacaagttcttggtacttaaacaatctgcaagtagatgagta-ttctcatg-aggccctccaattctt |
1008 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||| |
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|
| T |
40377613 |
ttgatgttgctgatacaagttcttggtactcaaacaatatgcaagttgatgagtatttctcatgaaggccctccaattctt |
40377533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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