View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029-Insertion-11 (Length: 375)

Name: NF5029-Insertion-11
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029-Insertion-11
NF5029-Insertion-11
[»] chr6 (4 HSPs)
chr6 (11-375)||(33050800-33051164)
chr6 (8-117)||(33032460-33032569)
chr6 (271-374)||(33032816-33032921)
chr6 (8-105)||(33032189-33032285)
[»] chr1 (4 HSPs)
chr1 (8-118)||(38903877-38903987)
chr1 (8-105)||(38903519-38903615)
chr1 (8-107)||(38904213-38904312)
chr1 (319-374)||(9901044-9901098)
[»] chr8 (2 HSPs)
chr8 (8-105)||(43522011-43522107)
chr8 (8-44)||(43522202-43522238)
[»] chr4 (4 HSPs)
chr4 (8-105)||(53017180-53017276)
chr4 (298-374)||(8264038-8264114)
chr4 (298-374)||(8277456-8277532)
chr4 (8-80)||(53017405-53017476)
[»] chr7 (1 HSPs)
chr7 (304-374)||(7975171-7975240)
[»] chr5 (1 HSPs)
chr5 (304-374)||(13838170-13838239)
[»] chr3 (1 HSPs)
chr3 (304-374)||(1293823-1293892)
[»] chr2 (1 HSPs)
chr2 (304-374)||(26543727-26543796)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 33050800 - 33051164
Alignment:
Q  11 tgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgaggtcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050800 tgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgaggtcaa 33050899  T
Q  111 attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050900 attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt 33050999  T
Q  211 gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051000 gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg 33051099  T
Q  311 atgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaa 375  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33051100 atgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattttctcatacccaa 33051164  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 33032460 - 33032569
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgaggt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| |||||||    
T  33032460 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgccgggcttgagagttaatgctgctgtatccttccttggatgtctgaggt 33032559  T
Q  108 caaattattc 117  Q
    | ||||||||    
T  33032560 ctaattattc 33032569  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 33032816 - 33032921
Alignment:
Q  271 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca 368  Q
    |||||||||| ||||| |||| |  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33032816 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca 33032915  T
Q  369 taccca 374  Q
    ||||||    
T  33032916 taccca 33032921  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 33032189 - 33032285
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgag 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||| |||||| | |||||||||||||||| |||||    
T  33032189 gcttgtttctcaaaacattcgcagtggccgcctaagaactttcgcc-ttcgccaggcttgagagtttatgctgttttatccttccttggatgtctgag 33032285  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 38903877 - 38903987
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgaggt 107  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| | |||||||||||||| |||||||    
T  38903877 gcttgtttctcaaaacattcgcagtggccgcctaagaactttcgcctttcgccgggcttgagagttaatgctgctatttccttccttggatgtctgaggt 38903976  T
Q  108 caaattattct 118  Q
    |||||||||||    
T  38903977 caaattattct 38903987  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 38903519 - 38903615
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || ||||| | |||||||||||||||| |||||    
T  38903519 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcc-ttcgccaggcttgagagctagtgctgttttatccttccttggatgtctgag 38903615  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 38904213 - 38904312
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgct-ctatccttccttggatgcctgagg 106  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||  ||||||||| |||||| | | || |||||||||||||| ||||||    
T  38904213 gcttgtttctcaaaacattcgcagtggctgcctaatagctttcgcc-ttcgccaggcttgagagctaatgcagttactttccttccttggatgtctgagg 38904311  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 9901098 - 9901044
Alignment:
Q  319 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||||||||||||||||||||||||| || |  |||||||||||||||||||||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcataccca 9901044  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 43522011 - 43522107
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgag 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||||||||||||||||||| |||||||||||||||| |||||    
T  43522011 gcttgtttctcaaaacattcgcagtggccgcctaagaactttcgcc-ttcgccaggcttgagagttaatgctgctttatccttccttggatgtctgag 43522107  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 43522202 - 43522238
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaaga 44  Q
    ||||||||||||||||||||||| |||||||||||||    
T  43522202 gcttgtttctcaaaacattcgcattggccgcctaaga 43522238  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 53017276 - 53017180
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctgctctatccttccttggatgcctgag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || ||||||| |||||||||||||||| |||||    
T  53017276 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcc-ttcgccaggcttgagagctagtgctgctttatccttccttggatgtctgag 53017180  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 8264038 - 8264114
Alignment:
Q  298 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcataccca 8264114  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 8277456 - 8277532
Alignment:
Q  298 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcataccca 8277532  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 53017476 - 53017405
Alignment:
Q  8 gcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttcgcctagcttgagagttaatgctg 80  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| ||||||  ||||||||| ||||||||    
T  53017476 gcttgtttctcaaaacattcgcagtggccgaccaagagctttcgcc-ttcgccaggcttgagagctaatgctg 53017405  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 7975171 - 7975240
Alignment:
Q  304 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| |||||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttataccca 7975240  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 13838239 - 13838170
Alignment:
Q  304 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| |||||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttataccca 13838170  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 1293892 - 1293823
Alignment:
Q  304 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| |||||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttataccca 1293823  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 26543796 - 26543727
Alignment:
Q  304 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcataccca 374  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| |||||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttataccca 26543727  T

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