View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029-Insertion-12 (Length: 262)

Name: NF5029-Insertion-12
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029-Insertion-12
NF5029-Insertion-12
[»] chr1 (2 HSPs)
chr1 (7-262)||(5914140-5914395)
chr1 (9-262)||(5909645-5909898)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 5914140 - 5914395
Alignment:
Q  7 aatcatcacatctaaaaatctctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttttttcctttcttcacaaccat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5914140 aatcatcacatctaaaaatctctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttttttcctttcttcacaaccat 5914239  T
Q  107 atttgcaactataagatgaacttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttgcaactattatgtccatgttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5914240 atttgcaactataagatgaacttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttgcaactattatgtccatgttt 5914339  T
Q  207 tcatatgttgcgaattcgggcattggtaactcgggacatgttggaacatcgctttc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5914340 tcatatgttgcgaattcgggcattggtaactcgggacatgttggaacatcgctttc 5914395  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 5909645 - 5909898
Alignment:
Q  9 tcatcacatctaaaaatctctaacattggtctacatttactccaaaacacaaccttactcttccatttccaatccttttttcctttcttcacaaccatat 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | |||  ||||||||| ||||||||| || || |||||||||||||||||||    
T  5909645 tcatcacatctaaaaatctccaacattggtctacatttactccaaaaaataactctactcttccgtttccaatctttcttccctttcttcacaaccatat 5909744  T
Q  109 ttgcaactataagatgaacttgtaaccttaaaacttctctcccccacccttctaatggatacttgcatggtaactttgcaactattatgtccatgttttc 208  Q
    |||| || ||||||||||||||||||||||||||||| ||  |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5909745 ttgctaccataagatgaacttgtaaccttaaaacttccctagcccatccttcttctggatacttgcatggtaactttgcaactattatgtccatgttttc 5909844  T
Q  209 atatgttgcgaattcgggcattggtaactcgggacatgttggaacatcgctttc 262  Q
     |||||||| ||||| ||||||||||| || |||||||||||||| ||||||||    
T  5909845 gtatgttgcaaattctggcattggtaattcaggacatgttggaacttcgctttc 5909898  T

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