View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5029-Insertion-5 (Length: 608)
Name: NF5029-Insertion-5
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029-Insertion-5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 36948344 - 36947882
Alignment:
| Q |
7 |
atctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948344 |
atctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaag |
36948245 |
T |
|
| Q |
107 |
acagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948244 |
acagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataat |
36948145 |
T |
|
| Q |
207 |
agaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctgga |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948144 |
agaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctgga |
36948045 |
T |
|
| Q |
307 |
acagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttgaatgtggggttggggtcttctgccg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
36948044 |
acagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttaaatgtggggttggggacttctgccg |
36947945 |
T |
|
| Q |
407 |
ataaatattgtggtacaatgttgttggggactttttctgctctgtccctatatctatccaaac |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36947944 |
ataaatattgtggtacaatgttgttggggactttttctgctctgtccctatatctatccaaac |
36947882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 36 - 371
Target Start/End: Original strand, 37079404 - 37079739
Alignment:
| Q |
36 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaatt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||| | |
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|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
136 |
ggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattg |
235 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
236 |
tgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagt |
335 |
Q |
| |
|
||||||| |||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagt |
37079703 |
T |
|
| Q |
336 |
gattataagggttgaaaccaatatcagtgtctctac |
371 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |
|
|
| T |
37079704 |
gattataagggttgaaaccaatgtgagtgtctctac |
37079739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 52 - 378
Target Start/End: Original strand, 37069660 - 37069986
Alignment:
| Q |
52 |
gccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattttca |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || || ||||||||| ||||||||| ||||| || ||||||| |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
152 |
gagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
251 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
252 |
tgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataagggttgaa |
351 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaa |
37069959 |
T |
|
| Q |
352 |
accaatatcagtgtctctaccatgtct |
378 |
Q |
| |
|
|||||| | |||||||||||| ||||| |
|
|
| T |
37069960 |
accaatgtgagtgtctctaccctgtct |
37069986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 36956416 - 36956074
Alignment:
| Q |
11 |
caaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacag |
110 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| | |
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|
| T |
36956416 |
caaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataa |
36956317 |
T |
|
| Q |
111 |
tgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaa |
210 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
36956316 |
tgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagca |
36956217 |
T |
|
| Q |
211 |
ctaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacag |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
36956216 |
ctaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacag |
36956117 |
T |
|
| Q |
311 |
caaaacatgctgctactgatgcagtgattataagggttgaaac |
353 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
36956116 |
ctaaacatgctgctactgatgctgtgattataagtgttgaaac |
36956074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 36935554 - 36935220
Alignment:
| Q |
19 |
acaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatga |
118 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | ||||| | ||||||||||||||||||||||| ||||| |||||||||||||| | || || | |
|
|
| T |
36935554 |
acaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataa |
36935455 |
T |
|
| Q |
119 |
gagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatgga |
218 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||| || ||| |||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36935454 |
gagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatgga |
36935355 |
T |
|
| Q |
219 |
actgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacat |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||||| ||||||||| |||| ||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
36935354 |
actgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacat |
36935255 |
T |
|
| Q |
319 |
gctgctactgatgcagtgattataagggttgaaac |
353 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |
|
|
| T |
36935254 |
gctgctactgaagcagtgattataagtgttgaaac |
36935220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 36971718 - 36971641
Alignment:
| Q |
303 |
tggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtcttt |
380 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaaccaatatcagtgtctctaccatgtcttt |
36971641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 554 - 608
Target Start/End: Complemental strand, 36947797 - 36947743
Alignment:
| Q |
554 |
cattgctcctttgggattcttcatgttcttgttcaatatagactagtgctgctga |
608 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36947797 |
cattgctcctttgggattcttcatgctcttgttcaatatagactagtgctgctga |
36947743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 12493408 - 12493750
Alignment:
| Q |
11 |
caaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacag |
110 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||| || | ||| |||||||||||||| | |
|
|
| T |
12493408 |
caaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataa |
12493507 |
T |
|
| Q |
111 |
tgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaa |
210 |
Q |
| |
|
|| ||||||||||||||||||| ||||| || ||||| |||| || | |||||||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
12493508 |
cgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagca |
12493607 |
T |
|
| Q |
211 |
ctaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacag |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
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|
| T |
12493608 |
ctaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacag |
12493707 |
T |
|
| Q |
311 |
caaaacatgctgctactgatgcagtgattataagggttgaaac |
353 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
12493708 |
ctaaacatgctgctactgaagcagtgattataagtgttgaaac |
12493750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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