View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029-Insertion-6 (Length: 552)

Name: NF5029-Insertion-6
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029-Insertion-6
NF5029-Insertion-6
[»] chr4 (16 HSPs)
chr4 (261-513)||(42677790-42678042)
chr4 (12-198)||(42678105-42678294)
chr4 (261-513)||(45872827-45873078)
chr4 (83-195)||(14440735-14440847)
chr4 (83-195)||(56092812-56092924)
chr4 (90-195)||(45872656-45872761)
chr4 (83-183)||(12130141-12130241)
chr4 (265-337)||(14440908-14440980)
chr4 (261-334)||(12130319-12130392)
chr4 (424-513)||(12130391-12130480)
chr4 (280-427)||(52635364-52635512)
chr4 (83-183)||(19676174-19676274)
chr4 (83-159)||(19676903-19676979)
chr4 (128-191)||(44496475-44496538)
chr4 (262-334)||(55728352-55728424)
chr4 (83-174)||(2181134-2181223)
[»] chr3 (13 HSPs)
chr3 (261-513)||(46743075-46743328)
chr3 (83-194)||(52991808-52991919)
chr3 (83-192)||(46743398-46743507)
chr3 (83-193)||(3460949-3461059)
chr3 (84-198)||(31625481-31625596)
chr3 (272-346)||(52991656-52991730)
chr3 (83-169)||(54594298-54594380)
chr3 (83-119)||(52700598-52700634)
chr3 (299-423)||(31698936-31699061)
chr3 (262-369)||(52984642-52984750)
chr3 (270-333)||(3460808-3460872)
chr3 (390-462)||(11387309-11387381)
chr3 (461-513)||(31699136-31699187)
[»] chr1 (25 HSPs)
chr1 (261-513)||(27786929-27787182)
chr1 (261-510)||(29099240-29099491)
chr1 (83-183)||(15495508-15495608)
chr1 (290-499)||(25537443-25537649)
chr1 (83-198)||(4654175-4654289)
chr1 (83-195)||(10494319-10494431)
chr1 (83-171)||(26842701-26842787)
chr1 (83-184)||(27787259-27787360)
chr1 (83-171)||(29099063-29099151)
chr1 (83-195)||(25537235-25537348)
chr1 (83-183)||(8038864-8038964)
chr1 (83-174)||(40581081-40581171)
chr1 (83-195)||(14351740-14351853)
chr1 (427-513)||(15495749-15495835)
chr1 (261-338)||(15495674-15495751)
chr1 (83-195)||(47896349-47896461)
chr1 (274-408)||(10494511-10494647)
chr1 (86-177)||(11814175-11814266)
chr1 (275-405)||(11814323-11814454)
chr1 (270-415)||(14351498-14351644)
chr1 (275-423)||(2077707-2077856)
chr1 (83-195)||(2077942-2078054)
chr1 (388-432)||(8039067-8039111)
chr1 (388-462)||(47896550-47896624)
chr1 (354-510)||(26842169-26842317)
[»] chr7 (18 HSPs)
chr7 (261-513)||(32978921-32979174)
chr7 (270-511)||(21590727-21590969)
chr7 (364-509)||(34293704-34293850)
chr7 (83-193)||(31038620-31038730)
chr7 (386-513)||(36582670-36582798)
chr7 (83-197)||(10365418-10365531)
chr7 (90-195)||(21591045-21591148)
chr7 (83-195)||(34293916-34294025)
chr7 (83-196)||(43048206-43048319)
chr7 (262-408)||(24717708-24717856)
chr7 (83-185)||(32978745-32978845)
chr7 (364-430)||(26711932-26711998)
chr7 (139-195)||(7437045-7437101)
chr7 (262-408)||(43047991-43048139)
chr7 (86-183)||(24717541-24717638)
chr7 (388-432)||(10365618-10365662)
chr7 (272-337)||(7437180-7437246)
chr7 (83-152)||(36933791-36933860)
[»] chr8 (14 HSPs)
chr8 (265-513)||(10181769-10182018)
chr8 (271-510)||(15050232-15050469)
chr8 (270-399)||(39580354-39580484)
chr8 (83-195)||(15050546-15050658)
chr8 (83-184)||(38498866-38498967)
chr8 (83-195)||(10181587-10181697)
chr8 (261-413)||(5514981-5515135)
chr8 (83-192)||(25142524-25142633)
chr8 (83-160)||(39582135-39582211)
chr8 (83-195)||(5514803-5514915)
chr8 (83-174)||(38149876-38149965)
chr8 (83-157)||(6443323-6443397)
chr8 (461-513)||(3763149-3763200)
chr8 (276-339)||(3763360-3763424)
[»] chr2 (19 HSPs)
chr2 (261-513)||(1533003-1533256)
chr2 (264-507)||(27888480-27888724)
chr2 (261-513)||(40899929-40900182)
chr2 (83-195)||(6705141-6705252)
chr2 (90-195)||(27888306-27888410)
chr2 (83-195)||(40899750-40899862)
chr2 (92-195)||(9910107-9910210)
chr2 (83-193)||(28165415-28165525)
chr2 (262-421)||(6186572-6186732)
chr2 (261-338)||(6705306-6705383)
chr2 (262-421)||(14951138-14951298)
chr2 (274-430)||(38531651-38531808)
chr2 (83-174)||(36592512-36592601)
chr2 (83-189)||(33543927-33544033)
chr2 (83-183)||(6186832-6186933)
chr2 (83-185)||(1532826-1532927)
chr2 (276-423)||(9910292-9910441)
chr2 (427-513)||(6705381-6705467)
chr2 (118-194)||(38531919-38531996)
[»] chr5 (24 HSPs)
chr5 (83-195)||(26331927-26332039)
chr5 (270-450)||(24867339-24867520)
chr5 (270-442)||(26331678-26331852)
chr5 (270-442)||(26331337-26331510)
chr5 (116-195)||(26331585-26331664)
chr5 (83-195)||(40680507-40680618)
chr5 (83-179)||(42220945-42221041)
chr5 (262-415)||(12155942-12156096)
chr5 (85-195)||(24867577-24867687)
chr5 (83-194)||(11470348-11470461)
chr5 (83-193)||(34574654-34574764)
chr5 (275-415)||(40600176-40600318)
chr5 (275-427)||(11470545-11470700)
chr5 (98-189)||(23247244-23247335)
chr5 (261-335)||(40680672-40680745)
chr5 (428-513)||(40680747-40680832)
chr5 (85-195)||(42269320-42269430)
chr5 (444-508)||(34574327-34574392)
chr5 (299-415)||(42269097-42269214)
chr5 (83-182)||(12155740-12155840)
chr5 (83-183)||(30248160-30248259)
chr5 (83-183)||(40600411-40600511)
chr5 (264-337)||(42221119-42221193)
chr5 (274-337)||(30248347-30248411)
[»] chr6 (14 HSPs)
chr6 (364-513)||(9566640-9566790)
chr6 (275-498)||(10670231-10670446)
chr6 (83-195)||(78406-78518)
chr6 (83-195)||(31026778-31026892)
chr6 (275-430)||(30845097-30845254)
chr6 (271-422)||(10772565-10772718)
chr6 (270-427)||(24350482-24350641)
chr6 (83-195)||(10670507-10670618)
chr6 (83-195)||(11366388-11366497)
chr6 (83-183)||(32748060-32748160)
chr6 (83-140)||(9566470-9566527)
chr6 (261-338)||(31026647-31026724)
chr6 (388-432)||(11366586-11366630)
chr6 (127-194)||(24842694-24842762)
[»] scaffold0083 (2 HSPs)
scaffold0083 (83-195)||(2665-2777)
scaffold0083 (270-378)||(2856-2967)
[»] scaffold0974 (1 HSPs)
scaffold0974 (83-198)||(2915-3030)
[»] scaffold0725 (1 HSPs)
scaffold0725 (447-513)||(953-1020)
[»] scaffold0005 (2 HSPs)
scaffold0005 (83-160)||(269590-269667)
scaffold0005 (388-462)||(269783-269857)
[»] scaffold0088 (1 HSPs)
scaffold0088 (448-513)||(26868-26934)
[»] scaffold0027 (1 HSPs)
scaffold0027 (264-337)||(2599-2673)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 261 - 513
Target Start/End: Complemental strand, 42678042 - 42677790
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaaaaa-tct 359  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||    
T  42678042 cactgatgaccctcgaagccaataaaaattaaacatcaaaccaagaagtcatctctcaaaaccaaagtctaaacgcctgcacaataacataaaaaaatct 42677943  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  42677942 tgtaccaaactgttgaaaaacctcttcaaaataaccatgaaacctaccacaaactcatgtaaccgcaccttaaacaagtcacagtgtctaacatccatgt 42677843  T
Q  460 attgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  42677842 attgaaaacctcatcaacaac-aaactcatagaagaaaacccacaaaaagcata 42677790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 42678294 - 42678105
Alignment:
Q  12 atacgaatatactgtctttgtcatctgagttagcttatgggtactcacacgaaagagatcnnnnnnnnnnn-----aagaagctaaaatggaatttattt 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                 |||||| ||||||||||||| |||    
T  42678294 atacgaatatattgtctttgtcatctgagttagcttatgggtactcacacgaaagagattctttttttttttttttaagaagttaaaatggaatttgttt 42678195  T
Q  107 aaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgtatatatgtgg 198  Q
    ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42678194 aaaaca--gagaatcctagcaagcacgagaaatgctaggctaggagacttaaaaagtaacataaaaaggaaaagtgtctcgtatatatgtgg 42678105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 261 - 513
Target Start/End: Original strand, 45872827 - 45873078
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||| ||||||||||||||||||| || ||| |||||| | ||||||||| | |||| |||||||||||||| ||| ||||| || ||| ||||||    
T  45872827 cactgagg-ccctcgaaaccaataaaaactagacaccaaacccataagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcagaaacaaatct 45872925  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||||| |||| |||| ||||  ||| ||||||||||| ||||||||||| |||| || |||||| |||||||| ||||||| || |||||||||||||||    
T  45872926 tgtacgaaaccgttgcaaaacgtctccaaaataaccaccaaacctaccaaaaacccacgtaaccgcaccttaaacaagtcataccgtctaacatccatgt 45873025  T
Q  460 at-tgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    || |||||||| | |||||||| |||||||||||| |||||||| ||||||||||    
T  45873026 atctgaaaacc-cctcaacaac-aaactcatagaagaaaacccataaaaagcata 45873078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 14440735 - 14440847
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||||||||||   ||||||||| ||||||||||||||| ||| ||||||||||||||||  || |||| ||||||||||     
T  14440735 aagaagctaaaatgaaatttatttaaaacactaagaatcctaacaagcacaagaaatgttagactaggagacttaaaaaacaatatactaaggaaaagtt 14440834  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  14440835 tgtcgtatatatg 14440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 56092924 - 56092812
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||| |   | |||||||||||||||||||| ||||||||||||||||| |||||||  || ||||| ||||||||||    
T  56092924 aagaagctaaaatgaaatttatttaacatgcaaagaatcctagcaagcacaaggaatgctaggctaggagaattaaaaaacaatatacacaggaaaagtg 56092825  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  56092824 tgtcgtatatatg 56092812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 45872656 - 45872761
Alignment:
Q  90 taaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgta 189  Q
    ||||||| ||||||||||||||| | | |||||||||||||||||| ||| |||||||| ||||||||||||  ||||||||||| ||||||||  ||||    
T  45872656 taaaatgaaatttatttaaaacacatataatcctagcaagcacaaggaatactaggctatgagacttaaaaaacaacatacaaagaaaaagtgttccgta 45872755  T
Q  190 tatatg 195  Q
    ||||||    
T  45872756 tatatg 45872761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 12130141 - 12130241
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||| |||||||||||   |||||||||||| ||| ||| |||||||||||||||||||||||||| | |||||| | ||||||||    
T  12130141 aagaagctaaaatgaaatctatttaaaacactaagaatcctagcatgcagaaggaatgctaggctaggagacttaaaaagcatcatacagaagaaaagtg 12130240  T
Q  183 t 183  Q
    |    
T  12130241 t 12130241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 14440908 - 14440980
Alignment:
Q  265 gaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcc 337  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||| ||||||    
T  14440908 gagggccctcgaaaccaataaaaactaaacaccaaaccaagaagtcatcttcaaaaaccaaagtctgaacgcc 14440980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 12130319 - 12130392
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaac 334  Q
    |||||||  ||||||||||||||||||| |||||| |||||||| ||||||||| | |||| ||||||||||||    
T  12130319 cactgagagccctcgaaaccaataaaaactaaacaccaaaccaataagtcatctccaaaaaccaaagtctaaac 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 513
Target Start/End: Original strand, 12130391 - 12130480
Alignment:
Q  424 acaccttaagcaagtcacactgtctaacatccatgtatt-gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||||| |||| |||   |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||  ||||||| ||||    
T  12130391 acaccttaaacaagccacgtcgtctaacatccatgtatttgaaaacctcatcaacaac-aaactcatagaagaaaactaacaaaaatcata 12130480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 427
Target Start/End: Original strand, 52635364 - 52635512
Alignment:
Q  280 caataaaaattaaacatcaaacc-aagaagtcatcttccaaaatc-aaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgttgaa 376  Q
    ||||||||| |||||| |||| | |||||||||| |||||||| | |||||||||||  | || ||||| || ||| ||||||||| |||||  |||| |    
T  52635364 caataaaaactaaacaccaaaactaagaagtcat-ttccaaaaactaaagtctaaacatccgctcaatagcagaaacaaatcttgtgccaaatcgttgca 52635462  T
Q  377 aaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacac 427  Q
    ||||| || ||||||||||||||||||||||| |||||| ||||| |||||    
T  52635463 aaatc-ctccaaaataaccatcaaacctaccaaaaactcgtgtaatcacac 52635512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 19676274 - 19676174
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| |||||||||||| ||| ||||| || ||||||||| | |||||||| |||| |||||||  | ||||||| || ||||||||||  |||||||    
T  19676274 aagaagttaaaatggaattgattcaaaacgtaaagaatcctatctagcacaaggaatgttaggctaaaatacttaaatagcaacatacaaaaaaaaagtg 19676175  T
Q  183 t 183  Q
    |    
T  19676174 t 19676174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 19676979 - 19676903
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaa 159  Q
    |||||| |||||||||||||||| ||||| || ||||||||| | |||||||| |||| ||||||| || |||||||    
T  19676979 aagaagttaaaatggaatttattcaaaacgtaaagaatcctatctagcacaaggaatgttaggctaagatacttaaa 19676903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 44496475 - 44496538
Alignment:
Q  128 agcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgtata 191  Q
    ||||||||||||| ||  |||||||||||||| || ||||||||||| |||||||| |||||||    
T  44496475 agcacaagaaatgttaaactaggagacttaaatagcaacatacaaagaaaaagtgtgtcgtata 44496538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 55728352 - 55728424
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaac 334  Q
    ||||||| |||| |||||||||||||| |||||| |||| |||||||||||||| | ||||  |||||||||||    
T  55728352 actgaggcccct-gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 55728424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 2181223 - 2181134
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaag 174  Q
    |||||| ||||||| |||||||| |||  | || |||||||| | |||||||| |||||||| ||||||| | ||||  |||||||||||||    
T  2181223 aagaagttaaaatgaaatttattaaaattacagtgaatcctaactagcacaaggaatgctagactaggagtcgtaaa--gtaacatacaaag 2181134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 261 - 513
Target Start/End: Complemental strand, 46743328 - 46743075
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||   |||| ||||||| ||||||| || ||||| || ||| ||||||    
T  46743328 cactgagggccctcgaaaccaataaaaactaaacatcaaaccaagaagtcatctctaaaaaccaaagtccaaacgcccgcgcaatagcagaaacaaatct 46743229  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||| ||||||  || ||||| || | ||||||||||||||||||||||| ||||||||| || | |||||||| |||| |||||  |||||||||| |||    
T  46743228 tgtgccaaaccattaaaaaacctatccaaaataaccatcaaacctaccaaaaactcatgcaatcgcaccttaaacaagccacaccatctaacatccgtgt 46743129  T
Q  460 a-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    | ||||||||| |||||||||| |||||||||||| |||||| | ||||||||||    
T  46743128 atttgaaaaccccatcaacaac-aaactcatagaagaaaacctataaaaagcata 46743075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 52991919 - 52991808
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||  |||||||| | ||||| ||    
T  52991919 aagaagctaaaatgaaatttatttaaaacacaaagaatcctagcaaacacaagaaatgctaggttaggagacttaaaaaacaacatacacatgaaaattg 52991820  T
Q  183 tctcgtatatat 194  Q
    | ||||||||||    
T  52991819 tgtcgtatatat 52991808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 46743507 - 46743398
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||||||||||| ||||||| | ||||||| ||||| || ||||||||||  |||||||    
T  46743507 aagaaggtaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaatgctaagttaggagatttaaagagcaacatacaaacaaaaagtg 46743408  T
Q  183 tctcgtatat 192  Q
    | ||||||||    
T  46743407 tttcgtatat 46743398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 3461059 - 3460949
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| |||||||| ||||| || ||||||||| | ||||| || ||||||||||||| ||||||||| || |||||||||||||||||||    
T  3461059 aagaagttaaaatgaaatttattcaaaacgtaaagaatcctaactagcacgaggaatgctaggctagaagacttaaatagcaacatacaaaggaaaagtg 3460960  T
Q  183 tctcgtatata 193  Q
    |  ||||||||    
T  3460959 taccgtatata 3460949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 31625481 - 31625596
Alignment:
Q  84 agaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaa-agtaacatacaaaggaaaagtg 182  Q
    ||||| ||||||| |||||||| |||||  | |||||| |||| |||||||| ||| |||| |||||||  |||| | || |||||||||||||||||||    
T  31625481 agaagttaaaatgaaatttattcaaaacgcaaagaatcatagcgagcacaaggaatactagactaggagttttaatatagcaacatacaaaggaaaagtg 31625580  T
Q  183 tctcgtatatatgtgg 198  Q
    | ||||||||||||||    
T  31625581 tgtcgtatatatgtgg 31625596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 52991730 - 52991656
Alignment:
Q  272 ctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaata 346  Q
    ||||||||||||| | | |||||| |||||||||||||||||| | |||||||||||||||||||| || |||||    
T  52991730 ctcgaaaccaatagagactaaacaccaaaccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaata 52991656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 54594380 - 54594298
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacata 169  Q
    |||||| |||||||||||||||    ||| || |||||||||||||| | ||| |||||||| ||||||||||||||||| ||||||    
T  54594380 aagaagttaaaatggaatttat----aacgtaaagaatcctagcaagaataaggaatgctagactaggagacttaaaaagcaacata 54594298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 52700634 - 52700598
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaa 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  52700634 aagaagctaaaatgaaatttatttaaaacatagagaa 52700598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 423
Target Start/End: Original strand, 31698936 - 31699061
Alignment:
Q  299 aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgttgaaaaatctcttcaaaataaccat 397  Q
    |||||| |||| |||| | |||| ||||||||||| ||||   |||||||||||| || ||||||  |||||||||| |||| |  | ||||||||||||    
T  31698936 aaccaaaaagtaatctccaaaaaccaaagtctaaatgcctaagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccat 31699035  T
Q  398 caaacctaccacaaactcatgtaacc 423  Q
     || ||||||| |||| | |||||||    
T  31699036 gaatcctaccaaaaacccgtgtaacc 31699061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 369
Target Start/End: Complemental strand, 52984750 - 52984642
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| |||| ||||||| |||||| |||||| |||| |||||||||||||| | ||||  ||||||||||| || || ||||| || ||| ||||||    
T  52984750 actgaggcccct-gaaaccattaaaaactaaacaccaaaaccaagaagtcatctgcaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatct 52984652  T
Q  360 tgtaccaaac 369  Q
    ||| ||||||    
T  52984651 tgtgccaaac 52984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 3460872 - 3460808
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatc-aaaccaagaagtcatcttccaaaatcaaagtctaaa 333  Q
    ||||||||||||||||||| |||||| | ||||||  ||||||||||||| || |||||| ||||    
T  3460872 ccctcgaaaccaataaaaactaaacaccaaaaccacaaagtcatcttccacaaccaaagtataaa 3460808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 11387309 - 11387381
Alignment:
Q  390 ataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt 462  Q
    ||||||||||||||||||| |||| || |||||| |||||||| |||  |||||   ||||||||| ||||||    
T  11387309 ataaccatcaaacctaccaaaaacccacgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtatt 11387381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 31699136 - 31699187
Alignment:
Q  461 ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  31699136 ttgaaaaccccattaacaacaaa-ctcatagaagaaaacccacaaaaaacata 31699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 261 - 513
Target Start/End: Complemental strand, 27787182 - 27786929
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||||| | |||| ||||||| ||||| |||| ||||| || ||| ||||||    
T  27787182 cactgagggccctcgaaaccaataaaaactaaacaccaaaccaagaagtcatctccaaaaaccaaagtccaaacgtctgcgcaatagcagaaacaaatct 27787083  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    |   ||||||  || ||||| |||| ||||||||||||||||||||||| |||| ||||||||  |||||||| |||| |||||  |||||||||| |||    
T  27787082 taagccaaaccattaaaaaacctctccaaaataaccatcaaacctaccaaaaacccatgtaactgcaccttaaacaagccacaccatctaacatccgtgt 27786983  T
Q  460 a-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    | ||||||||| |||||||||| ||||||||| || |||||||||||||||||||    
T  27786982 atttgaaaaccccatcaacaac-aaactcataaaagaaaacccacaaaaagcata 27786929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 261 - 510
Target Start/End: Original strand, 29099240 - 29099491
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||| ||||||||||||||| | | |||||| |  ||||||||||||||| | |||| |||||||||||||  ||| ||||| |||||| |||| |    
T  29099240 cactgagggccctcgaaaccaatagagactaaacaccgcaccaagaagtcatctccaaaaaccaaagtctaaacgtttgcgcaatagcataaacaaattt 29099339  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||| ||| |  ||||||||| |||| ||||||||||||||||| ||||| ||   ||||||| ||| |||||| |||| |||||  |||||||||||||     
T  29099340 tgtgccatatcgttgaaaaacctctccaaaataaccatcaaacttaccaaaagtccatgtaatcacgccttaaacaagccacaccatctaacatccatgc 29099439  T
Q  460 a-ttgaaaa-cctcatcaacaacaaaactcatagaacaaaacccacaaaaagc 510  Q
    | ||||||| || | |||||||| |||||||||||| ||||||||||||||||    
T  29099440 atttgaaaacccccctcaacaac-aaactcatagaagaaaacccacaaaaagc 29099491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 15495508 - 15495608
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||||||||||   |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15495508 aagaagctaaaatgaaatttatttaaaacactaagaatcatagcatgcacaagaaatgctaggctaggagacttaaaaagcaacatacaaaggaaaagtg 15495607  T
Q  183 t 183  Q
    |    
T  15495608 t 15495608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 25537443 - 25537649
Alignment:
Q  290 taaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgttgaaaaatctcttcaa 388  Q
    |||||| ||||||||||| ||||||   ||||||||||||||||||||| |  |||| || ||| |||||||||  || || ||||||||| |||| |||    
T  25537443 taaacaccaaaccaagaaatcatctaa-aaaatcaaagtctaaacgcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctccaa 25537541  T
Q  389 aataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgta-ttgaaaacctcatcaacaacaaaactc 487  Q
      |||||||||||||||||| |||||||||||||| |||||||| |||| ||||| ||||||||| |||||| ||||||| | | |||||||| ||||||    
T  25537542 --taaccatcaaacctaccaaaaactcatgtaaccgcaccttaaacaagccacaccgtctaacat-catgtatttgaaaatcccctcaacaac-aaactc 25537637  T
Q  488 atagaacaaaac 499  Q
    |||||| |||||    
T  25537638 atagaagaaaac 25537649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 4654289 - 4654175
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| || |||||||||||| | |||||||||||||||||| | ||||||| ||||| ||||||||| || |||||||||||| ||||||    
T  4654289 aagaagctaaaatgaaaattatttaaaacacaaagaatcctagcaagcacagggaatgctaagctagaagacttaaagagcaacatacaaagggaaagtg 4654190  T
Q  183 tctcgtatatatgtgg 198  Q
    |||| |||||||||||    
T  4654189 tctc-tatatatgtgg 4654175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 10494319 - 10494431
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||| |||||  | |||||||||||||||||||| ||||   |||||||||||||||| || |||||||||||||||||||    
T  10494319 aagaagctaaaatgaaatttattcaaaacgcaaagaatcctagcaagcacaaggaatgtctggctaggagacttaaatagcaacatacaaaggaaaagtg 10494418  T
Q  183 tctcgtatatatg 195  Q
    | | |||||||||    
T  10494419 tgttgtatatatg 10494431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 26842701 - 26842787
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacataca 171  Q
    |||||||||||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  26842701 aagaagctaaaatgaaatttatttaaaacacaga--atcctagcaagcacaaggaatgctaggttaggagacttaaaaagcaacataca 26842787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 27787360 - 27787259
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||||||| || | |||||| ||||||||||||| ||||||| ||||||||||||||| |  |||||||||| ||||||||    
T  27787360 aagaagctaaaatgaaatttatttaaagcacaaagaatcttagcaagcacaaggaatgctaagctaggagacttaaagaacaacatacaaacgaaaagtg 27787261  T
Q  183 tc 184  Q
    ||    
T  27787260 tc 27787259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 29099063 - 29099151
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacataca 171  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  29099063 aagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaacgctaggctaggagacttaaaaaacaacataca 29099151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 25537235 - 25537348
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagactt-aaaaagtaacatacaaaggaaaagt 181  Q
    ||||||||||||||  |||||||||| |   | |||||||||||||||||||  |||||||||||||||||||| |||||  |||||||| |||||||||    
T  25537235 aagaagctaaaatgatatttatttaacatgcaaagaatcctagcaagcacaaagaatgctaggctaggagacttaaaaaaacaacatacacaggaaaagt 25537334  T
Q  182 gtctcgtatatatg 195  Q
    || |||||||||||    
T  25537335 gtgtcgtatatatg 25537348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 8038864 - 8038964
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||||||| | | |||||||||||||||||| ||||||| ||||| ||||||||| |  | |||| ||||||||||||    
T  8038864 aagaagctaaaatgaaatttatttaaaacacaaaaaatcctagcaagcacaaggaatgctaagctagaagacttaaagaacaccatataaaggaaaagtg 8038963  T
Q  183 t 183  Q
    |    
T  8038964 t 8038964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 40581171 - 40581081
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaag 174  Q
    |||||||||||||| ||||||||||||||| | |||||| ||||||||||||| ||||||| ||||| |||||| ||||| |||||||||||    
T  40581171 aagaagctaaaatgaaatttatttaaaacacaaagaatcttagcaagcacaaggaatgctaagctagaagactt-aaaagcaacatacaaag 40581081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 14351853 - 14351740
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaa-aagtaacatacaaaggaaaagt 181  Q
    |||||||||||||| |||||||| ||||   | ||||||||||| |||||||| |||||||| ||||||  ||||||  || ||||||||||||||||||    
T  14351853 aagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaaggaatgctagactaggaatcttaaagtagcaacatacaaaggaaaagt 14351754  T
Q  182 gtctcgtatatatg 195  Q
    || |||||||||||    
T  14351753 gtgtcgtatatatg 14351740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 15495749 - 15495835
Alignment:
Q  427 ccttaagcaagtcacactgtctaacatccatgta-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    |||||| |||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||  |||||||||||    
T  15495749 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacctcatcaacaac-aaactcatagaagaaaaccttcaaaaagcata 15495835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 15495674 - 15495751
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcct 338  Q
    |||||||| ||||||||| ||||||||| |||||| |||||||||||||||||  | |||| ||||||||||||||||    
T  15495674 cactgagggccctcgaaagcaataaaaactaaacaccaaaccaagaagtcatcaccaaaaaccaaagtctaaacgcct 15495751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 47896349 - 47896461
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaa-agtaacatacaaaggaaaagt 181  Q
    |||||| ||||||| ||||||||||||| | | |||||||||||||||| ||| |||| || | ||| |||||||||| || ||||||||||| ||||||    
T  47896349 aagaagttaaaatgaaatttatttaaaatacaaagaatcctagcaagcataaggaatgttaagttagaagacttaaaagagcaacatacaaagaaaaagt 47896448  T
Q  182 gtctcgtatatatg 195  Q
    ||| ||||||||||    
T  47896449 gtc-cgtatatatg 47896461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 408
Target Start/End: Original strand, 10494511 - 10494647
Alignment:
Q  274 cgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactg 371  Q
    ||||||||||||||| |||||| |||| || | ||||||||| | |||||||||||||||||||||   ||||| || ||| ||||||||| ||||||      
T  10494511 cgaaaccaataaaaactaaacaacaaaacccaaaagtcatctccaaaaatcaaagtctaaacgcctttgcaatagcagaaacaaatcttgtgccaaacca 10494610  T
Q  372 ttgaaaaatctcttcaaaataaccatcaaacctacca 408  Q
    ||| |||| | ||  ||||||||||||||||||||||    
T  10494611 ttgcaaaacccctataaaataaccatcaaacctacca 10494647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 11814175 - 11814266
Alignment:
Q  86 aagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaa 177  Q
    ||||||||||| |||||||| |||||  | ||||||||| |||||| ||| || ||| |||||||||||||||| || ||||||||||||||    
T  11814175 aagctaaaatgaaatttattcaaaacgcaaagaatcctaacaagcagaaggaaagcttggctaggagacttaaatagcaacatacaaaggaa 11814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 405
Target Start/End: Original strand, 11814323 - 11814454
Alignment:
Q  275 gaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgtt 373  Q
    ||||||||||||||||||| | ||||| || |||| |||| | |||| | |||||||||||| ||| ||||| || ||| ||||||||| || |||||||    
T  11814323 gaaaccaataaaaattaaataccaaactaaaaagtgatctccaaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgtt 11814422  T
Q  374 gaaaaatctcttcaaaataaccatcaaaccta 405  Q
    | |||| | || |||| |||||||||||||||    
T  11814423 gcaaaacccctccaaagtaaccatcaaaccta 11814454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 415
Target Start/End: Complemental strand, 14351644 - 14351498
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaac-caagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaa 367  Q
    |||| |||||||| |||||||||||| ||||  ||||||||||||| | ||||  ||||||||||| || || ||||| || ||| ||||||||| ||||    
T  14351644 cccttgaaaccaa-aaaaattaaacaccaaaatcaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaa 14351546  T
Q  368 actgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactc 415  Q
    ||  ||| |||| | || ||||||||||||||||||||||| ||||||    
T  14351545 accattgcaaaacccctccaaaataaccatcaaacctaccaaaaactc 14351498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 423
Target Start/End: Complemental strand, 2077856 - 2077707
Alignment:
Q  275 gaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgt 372  Q
    |||||||||||||| |||||| |||| |||| ||||||||| | |||| ||||||||||||| |||  ||||| |||||| || |||||| | |||| ||    
T  2077856 gaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaaagtctaaacgtctgagcaatagcataaacaagtcttgtgcaaaaccgt 2077757  T
Q  373 tgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaacc 423  Q
    || |||| |  | |||||||| |||||||||||||| |||||| |||||||    
T  2077756 tgcaaaacccatccaaaataatcatcaaacctacca-aaactcctgtaacc 2077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 2078054 - 2077942
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| | |||||| ||||   | ||||||||||||| || ||| |||||| |||||||||||||||  || ||||| |||||||||| ||    
T  2078054 aagaaggtaaaatgaagtttattcaaaatgcaaagaatcctagcaaacataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactg 2077955  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  2077954 tgtcgtatatatg 2077942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 8039067 - 8039111
Alignment:
Q  388 aaataaccatcaaacctaccacaaactcatgtaaccacaccttaa 432  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  8039067 aaataaccatcaaacctaccaaaaacccatgtaaccacaccttaa 8039111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 47896550 - 47896624
Alignment:
Q  388 aaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt 462  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| |||  |||||   ||||||||| ||||||    
T  47896550 aaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtatt 47896624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 510
Target Start/End: Complemental strand, 26842317 - 26842169
Alignment:
Q  354 aaatcttgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacat 453  Q
    |||||||||  || || ||||||||| |||| |||| |||||||||||||||||| |||| |||||| || || ||||| |||  ||||| |||||||||    
T  26842317 aaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgtacccgcatcttaaacaa-ccacaccgtctaacat 26842219  T
Q  454 ccatgtattgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagc 510  Q
      ||   ||||||||| || ||||    |||||||||||| |||| |||||||||||    
T  26842218 gtat---ttgaaaaccccaacaac----aaactcatagaagaaaatccacaaaaagc 26842169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 261 - 513
Target Start/End: Original strand, 32978921 - 32979174
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||  |||| |||| ||||||||| ||||||  ||||||||||||||||| | |||| ||||||| |||||||||| |||| ||||||| ||||||    
T  32978921 cactgagcgcccttgaaatcaataaaaactaaacactaaaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatgacataaacaaatct 32979020  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||| |||||||||| ||||| |||| |||||||||||||||||| |||| |||| ||||||||| |||||||| |||| |||||  ||||| ||||   |    
T  32979021 tgtgccaaactgttaaaaaacctctccaaaataaccatcaaacccaccaaaaacccatgtaaccgcaccttaaacaagccacaccatctaatatccgcct 32979120  T
Q  460 a-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    | ||||||||  |||||||||| |||||||||||| |||||||||||||||||||    
T  32979121 atttgaaaactccatcaacaac-aaactcatagaagaaaacccacaaaaagcata 32979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 270 - 511
Target Start/End: Complemental strand, 21590969 - 21590727
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaa 368  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| | |||| |||| ||||||||  ||  ||||| || ||| ||||||||| |||||    
T  21590969 ccctcgaaaccaataaaaattaaacaccaaatcaagaagtcatctccaaaaaacaaattctaaacgtttgtgcaatagcagaaacaaatcttgtgccaaa 21590870  T
Q  369 ctgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgta-ttgaaaa 467  Q
    | || ||||||||||| ||||||||||| ||||||||||| |||  ||| ||||| |||||||| |||||||| | || ||||||||||||| |||||||    
T  21590869 ccgtagaaaaatctctccaaaataaccaacaaacctaccaaaaatccatctaaccgcaccttaaacaagtcacgccgtttaacatccatgtatttgaaaa 21590770  T
Q  468 cctcatcaacaacaaaactcatagaacaaaacccacaaaaagca 511  Q
    |  ||||| |||| |||||||||||| |||||||||||||||||    
T  21590769 ctccatcatcaac-aaactcatagaagaaaacccacaaaaagca 21590727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 509
Target Start/End: Complemental strand, 34293850 - 34293704
Alignment:
Q  364 ccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt- 462  Q
    |||||| ||| |||||  ||| ||||||||||||||||||||||| |||  ||||||||| |||||||| |||  ||||    ||||||||||||||||     
T  34293850 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaatccatgtaaccgcaccttaaacaaaccacatcagctaacatccatgtattt 34293751  T
Q  463 gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaag 509  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  34293750 gaaaacctcatcaacaacaaaactcctagaagaaaacccacaaaaag 34293704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 31038620 - 31038730
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||||||||| || |||||| || | |||||||| |||||||||||| || ||||||| || |||||||||||||||||||    
T  31038620 aagaagctaaaatgaaatttatttaaaacgtaaagaatcttatctagcacaaggaatgctaggctaagatacttaaatagcaacatacaaaggaaaagtg 31038719  T
Q  183 tctcgtatata 193  Q
    | |||||||||    
T  31038720 tgtcgtatata 31038730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 36582670 - 36582798
Alignment:
Q  386 caaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt-gaaaacctcatcaacaacaaaa 484  Q
    ||||||||||||||||||||||| |||| ||||||||| ||| |||| |||  |||||    ||| |||| |||||| ||||||||||||||||||||||    
T  36582670 caaaataaccatcaaacctaccaaaaacccatgtaaccgcactttaaacaaaccacaccagttaagatccgtgtatttgaaaacctcatcaacaacaaaa 36582769  T
Q  485 ctcatagaacaaaacccacaaaaagcata 513  Q
    ||| ||||| |||||||||||||||||||    
T  36582770 ctcgtagaagaaaacccacaaaaagcata 36582798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 10365418 - 10365531
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||||||  ||||||| ||||| ||||||||| || | |||| || |||||||||    
T  10365418 aagaagctaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaagaatgctaagctagaagacttaaagagcaccatagaagggaaaagtg 10365517  T
Q  183 tctcgtatatatgtg 197  Q
     || |||||||||||    
T  10365518 act-gtatatatgtg 10365531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 21591148 - 21591045
Alignment:
Q  90 taaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgta 189  Q
    ||||||| ||||||||||||||| | ||||| |||||||||||||| ||||||| | |||||||||||||||  |||||||||  ||||||||| |||||    
T  21591148 taaaatgaaatttatttaaaacacaaagaattctagcaagcacaaggaatgctaagttaggagacttaaaaa--aacatacaagagaaaagtgtgtcgta 21591051  T
Q  190 tatatg 195  Q
    ||||||    
T  21591050 tatatg 21591045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 34294025 - 34293916
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||||||| |||  |||||||||||||||| ||||| || ||||| ||||| ||| || | |||||||||||||||||    
T  34294025 aagaagctaaaatgaaatttatttaaaacacaga--atcctagcaagcacaaaaaatgttaagctagaagactgaaagagcaccatacaaaggaaaagtg 34293928  T
Q  183 tctcgtatatatg 195  Q
    || ||||||||||    
T  34293927 tc-cgtatatatg 34293916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 43048319 - 43048206
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| | |||||| |||| ||| ||||||||| ||| |||||| |||||| || ||||||||||||  || |||||||||||||||| ||    
T  43048319 aagaagttaaaatgaagtttattcaaaatataaagaatcctaacaaacacaaggaatgcttggttaggagacttaagtaggaacatacaaaggaaaaatg 43048220  T
Q  183 tctcgtatatatgt 196  Q
    | ||||||||||||    
T  43048219 tgtcgtatatatgt 43048206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 408
Target Start/End: Original strand, 24717708 - 24717856
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| ||| | ||||||||||||| |||||| || |||||| ||||||||| | |||| |||||||||||||||||  |||||  | ||| || |||    
T  24717708 actgagggcccaccaaaccaataaaaactaaacaccataaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagtagaaacaagtct 24717807  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctacca 408  Q
    ||| |||||| |||| |||| |  | ||||||||||||||| |||||||    
T  24717808 tgtgccaaacagttgcaaaacccatccaaaataaccatcaatcctacca 24717856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 32978745 - 32978845
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| |||||| |||||||| |||  ||||||||||||| ||| |||  || |||| |||||||||| ||||||||| ||| ||||||||    
T  32978745 aagaagttaaaatgaaatttaattaaaacacaga--atcctagcaagcataaggaatattaagctatgagacttaaagagtaacatataaaagaaaagtg 32978842  T
Q  183 tct 185  Q
    |||    
T  32978843 tct 32978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 26711932 - 26711998
Alignment:
Q  364 ccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacacctt 430  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||| |||| ||||||||| ||||||    
T  26711932 ccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaacccatgtaaccgcacctt 26711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 7437045 - 7437101
Alignment:
Q  139 tgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgtatatatg 195  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||  ||||||||||    
T  7437045 tgctaggctaggagacttaaatagcaacatacaaagaaaaagtgtaccgtatatatg 7437101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 408
Target Start/End: Complemental strand, 43048139 - 43047991
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| ||| ||||||||||||||| ||||||  | ||| || ||||||||| | |||| ||||||||||| ||  |  ||||| |||||| ||||||    
T  43048139 actgagggcccccgaaaccaataaaaactaaacactagaacaaaaaagtcatctccaaaaaccaaagtctaaatgcacgagcaatagcataaacaaatct 43048040  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctacca 408  Q
    |||   |||| |||| ||||||  | |||||||||||||||||||||||    
T  43048039 tgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacctacca 43047991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 24717541 - 24717638
Alignment:
Q  86 aagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgt 183  Q
    ||||||||||| | |||||| |||||  | |||||| ||||||||||||| ||||||  |||| |||||||||  || || |||||||| ||||||||    
T  24717541 aagctaaaatgaagtttattcaaaacgcaaagaatcttagcaagcacaaggaatgcttagctatgagacttaagtaggaagatacaaagaaaaagtgt 24717638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 10365618 - 10365662
Alignment:
Q  388 aaataaccatcaaacctaccacaaactcatgtaaccacaccttaa 432  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  10365618 aaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaa 10365662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 7437180 - 7437246
Alignment:
Q  272 ctcgaaaccaataaaaattaaacatc-aaaccaagaagtcatcttccaaaatcaaagtctaaacgcc 337  Q
    ||||||||||||||||| |||||| | ||||||  |||||||||| ||||| |||||| ||||||||    
T  7437180 ctcgaaaccaataaaaactaaacaccaaaaccacaaagtcatctttcaaaaccaaagtataaacgcc 7437246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 36933791 - 36933860
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggag 152  Q
    ||||||| ||||||||||||||| ||| || |  |||||||| | |||||||| ||||||||| ||||||    
T  36933791 aagaagccaaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggag 36933860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 265 - 513
Target Start/End: Original strand, 10181769 - 10182018
Alignment:
Q  265 gaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgta 363  Q
    |||| ||||| ||||||||||||| ||||| ||||||||||||||||||| | ||||| |||| | ||||| |||   |||| |||||| ||||| |||     
T  10181769 gagggccctcaaaaccaataaaaactaaacttcaaaccaagaagtcatctccaaaaattaaagaccaaacgactgggaaatagcataaacaaatcatgtg 10181868  T
Q  364 ccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgta-tt 462  Q
    |||||| ||| ||||| |||| ||||||| ||||||||||||||| |||  ||||||||| |||||||| ||||||||||  | |||||||| |||| ||    
T  10181869 ccaaaccgttaaaaaacctctccaaaatagccatcaaacctaccaaaaatccatgtaaccgcaccttaaacaagtcacaccatataacatccgtgtattt 10181968  T
Q  463 gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||| |||||||||| |||||||||||| |||| ||||||||||||||    
T  10181969 gaaaaccccatcaacaac-aaactcatagaagaaaatccacaaaaagcata 10182018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 271 - 510
Target Start/End: Complemental strand, 15050469 - 15050232
Alignment:
Q  271 cctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaac 369  Q
    |||||||||||||| | | |||||| ||||||||||| ||||||   ||||||||||||||||||||| | ||||| || ||| |||||||||  || ||    
T  15050469 cctcgaaaccaatagagactaaacaccaaaccaagaaatcatctaaaaaaatcaaagtctaaacgcctacgcaatagcagaaacaaatcttgtgtcatac 15050370  T
Q  370 tgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgta-ttgaaaac 468  Q
     ||||||||| |||| |||  |||||||||||||||||| |||||||||||||| |||||||| ||||  |||| ||||||||| |||||| |||||||     
T  15050369 cgttgaaaaacctctccaa--taaccatcaaacctaccaaaaactcatgtaaccgcaccttaaacaagcaacaccgtctaacat-catgtatttgaaaat 15050273  T
Q  469 ctcatcaacaacaaaactcatagaacaaaacccacaaaaagc 510  Q
    | | |||||||| |||||||||||| ||||| ||||||||||    
T  15050272 cccctcaacaac-aaactcatagaagaaaacacacaaaaagc 15050232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 39580484 - 39580354
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaa 368  Q
    ||||| ||||||||| ||| ||||||  ||||||||||||||||| | |||| ||||||||||||| |||||||||| |||||| |||||||||  ||||    
T  39580484 ccctcaaaaccaatataaactaaacactaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtcaaa 39580385  T
Q  369 ctgttgaaaaatctcttcaaaataaccatca 399  Q
    | |||||||||||| | ||||||||||||||    
T  39580384 ccgttgaaaaatctatccaaaataaccatca 39580354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 15050658 - 15050546
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| ||||||||||| |   | ||||| |||||||||||||| ||||||||||||||||| |||||||  |||||||| ||||||||||    
T  15050658 aagaagctaaaatgaaatttatttaacatgcaaagaattctagcaagcacaaggaatgctaggctaggagaattaaaaaacaacatacacaggaaaagtg 15050559  T
Q  183 tctcgtatatatg 195  Q
    |  ||||||||||    
T  15050558 tgccgtatatatg 15050546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 38498866 - 38498967
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||||||||| | |||| || || |  ||||||||| || |||||||||||||||||||    
T  38498866 aagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacagggaatgttaagccataagacttaaagagcaacatacaaaggaaaagtg 38498965  T
Q  183 tc 184  Q
    ||    
T  38498966 tc 38498967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 10181587 - 10181697
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||| |||||| | ||||||||| |||| | |||||||| || |||| ||||||| ||||| ||||||||||||| |||||    
T  10181587 aagaagctaaaatgaaatttattgaaaacacaaagaatcctaacaagtataagaaatgttaagctaagagactt-aaaagcaacatacaaaggagaagtg 10181685  T
Q  183 tctcgtatatatg 195  Q
    ||| |||||||||    
T  10181686 tct-gtatatatg 10181697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 413
Target Start/End: Original strand, 5514981 - 5515135
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaaaaa-tc 358  Q
    |||||||| ||| | ||||||||||||||||||||||  |||||| ||||||||| | |||| |||| |||||| |||||  |||||  | ||| || ||    
T  5514981 cactgagggccccccaaaccaataaaaattaaacatcgtaaccaaaaagtcatctccaaaaaccaaattctaaatgcctgagcaatagtagaaacaagtc 5515080  T
Q  359 ttgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaac 413  Q
    |||| ||||||||||| ||||||  | ||||||||||||||| ||||||| ||||    
T  5515081 ttgtgccaaactgttgcaaaatccatccaaaataaccatcaatcctaccaaaaac 5515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 25142524 - 25142633
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||| |||||||| |||||| || | |||| ||| |||||||| ||| || ||||||| |  |||| ||||||||||||||    
T  25142524 aagaagctaaaatgaaatttattcaaaacataaagaatcttatctagcataaggaatgctagactaagatacttaaataacaacaaacaaaggaaaagtg 25142623  T
Q  183 tctcgtatat 192  Q
    | ||||||||    
T  25142624 tgtcgtatat 25142633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 39582211 - 39582135
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaa 160  Q
    |||||||||||||  ||||||||||||| | | | ||||||| |||||||||  |||||||||||| |||||||||||    
T  39582211 aagaagctaaaataaaatttatttaaaa-acacacaatcctaacaagcacaaagaatgctaggctatgagacttaaaa 39582135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 5514803 - 5514915
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| | |||||| |||||  | ||||||  |||||||||||  ||||||   |||||||||||||  || ||||||||||| || ||||    
T  5514803 aagaaggtaaaatgaagtttattcaaaacgcaaagaatctaagcaagcacaaagaatgcttaactaggagacttaagtaggaacatacaaagaaagagtg 5514902  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  5514903 tgtcgtatatatg 5514915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 38149965 - 38149876
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaag 174  Q
    |||||||||||||| |||||||| ||| || || |||| ||| | |||||||| |||||||| |||||||  ||  ||||||||||||||||    
T  38149965 aagaagctaaaatgaaatttattaaaatcacagtgaattctaaccagcacaaggaatgctagactaggag--ttgtaaagtaacatacaaag 38149876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 6443323 - 6443397
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagactta 157  Q
    |||||||||||||| |||||||| ||| || |  |||||||| | |||||||| | |||||||||||||| ||||    
T  6443323 aagaagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagtctta 6443397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 3763200 - 3763149
Alignment:
Q  461 ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    |||||||| |||| ||||||||| ||||||||| |||||||||||||| ||||    
T  3763200 ttgaaaacttcattaacaacaaa-ctcatagaagaaaacccacaaaaaacata 3763149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 3763424 - 3763360
Alignment:
Q  276 aaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctg 339  Q
    ||||||||||||| ||||||||  |||||| ||||||||| | ||||||||||| ||||| ||||    
T  3763424 aaaccaataaaaactaaacatcttaaccaaaaagtcatctccaaaaatcaaagtttaaacacctg 3763360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 261 - 513
Target Start/End: Original strand, 1533003 - 1533256
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||| ||| ||||| ||||||||||||  |||||| |||||||||||||||||| | |||| ||||||| |||||  ||| ||||| || ||| ||||||    
T  1533003 cactaagggccctcaaaaccaataaaagctaaacaccaaaccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgcaatagcagaaacaaatct 1533102  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||| ||||||  || ||||| |||| ||||||||||||||||| ||||| |||| ||||||| | |||||||| ||||||| ||  ||||| |||| |||    
T  1533103 tgtgccaaaccattaaaaaacctctccaaaataaccatcaaacttaccataaacccatgtaatcgcaccttaaacaagtcataccatctaatatccgtgt 1533202  T
Q  460 a-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    | ||||||||| |||||||||| |||||||||||| |||||||| ||||||||||    
T  1533203 atttgaaaaccccatcaacaac-aaactcatagaagaaaacccataaaaagcata 1533256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 264 - 507
Target Start/End: Original strand, 27888480 - 27888724
Alignment:
Q  264 tgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgt 362  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| |||| |||||  | ||| |||||||||    
T  27888480 tgagggccctcgaaaccaataaaaactaaacatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgt 27888579  T
Q  363 accaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt-at 461  Q
      |||||  || ||||| |||| ||||||||||||| ||||||||| |||||||||||||| ||  |||| |||| ||| |   ||||||||| |||  |    
T  27888580 gtcaaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaaccgcagtttaaacaagccacgccagctaacatccgtgtgtt 27888679  T
Q  462 tgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaa 507  Q
    |||||||| |||||||||| |||||||||||  |||||||||||||    
T  27888680 tgaaaaccccatcaacaac-aaactcatagaggaaaacccacaaaa 27888724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 513
Target Start/End: Original strand, 40899929 - 40900182
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||| | |||| |||| |||||||| ||   || ||  | ||| ||||||    
T  40899929 cactgagggccctcgagaccaataaaaactaaacatcaaaccaagaagccatctccaaaaaccaaattctaaacgtctatgcattagtagaaacaaatct 40900028  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgt 459  Q
    ||| |||||| ||  ||||| |||| ||||||| |||| |||||||||| |||  |||||||||  ||||||| |||| ||    |||||||||||||||    
T  40900029 tgtgccaaaccgtaaaaaaacctctccaaaatatccatgaaacctaccaaaaatccatgtaaccgaaccttaaacaagccatgacgtctaacatccatgt 40900128  T
Q  460 att-gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||| ||||||||||||| ||||||| ||||| ||| |||||||||||||||||||    
T  40900129 atttgaaaacctcatcatcaacaaa-ctcatggaagaaaacccacaaaaagcata 40900182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 6705141 - 6705252
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| |||||||||||||||   ||| ||| |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  6705141 aagaagctaaaatgaaatttatttaaaacactaaga-tcccagcaagcataaggaatgctaggctaggagacttaaaaaacaacatacaaaggaaaagtg 6705239  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  6705240 tgtcgtatatatg 6705252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 27888306 - 27888410
Alignment:
Q  90 taaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgta 189  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||  |||||||  |||||||| ||||| || ||||||||||||||||||||| ||||    
T  27888306 taaaatgaaatttatttaaaacataaagaatcctagcaagcacaacgaatgctaaactaggagaattaaagagcaacatacaaaggaaaagtgtc-cgta 27888404  T
Q  190 tatatg 195  Q
    ||||||    
T  27888405 tatatg 27888410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 40899750 - 40899862
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||  ||||||||||||||| | |||| ||||||||||||||| |||||||| ||| || |||||||||  |||||||||||||||||||    
T  40899750 aagaagttaaaataaaatttatttaaaacacaaagaaccctagcaagcacaaggaatgctagactatgatacttaaaaaacaacatacaaaggaaaagtg 40899849  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  40899850 tgtcgtatatatg 40899862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 9910107 - 9910210
Alignment:
Q  92 aaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgtata 191  Q
    ||||||| |||||| ||||| || |||||| ||||||||||||| |||| | ||||| |||||||||  || |||||||||||||||||||| |||||||    
T  9910107 aaatggagtttattcaaaacgtaaagaatcgtagcaagcacaaggaatgtttggctatgagacttaagtaggaacatacaaaggaaaagtgtgtcgtata 9910206  T
Q  192 tatg 195  Q
    ||||    
T  9910207 tatg 9910210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 28165525 - 28165415
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| |||||||||||||||| ||||| || | |||| || | |||||||| |||||||||||| || ||||||| || |||||| ||||||||||||    
T  28165525 aagaagataaaatggaatttattcaaaacgtaaataatcttatctagcacaaggaatgctaggctaagatacttaaatagcaacatataaaggaaaagtg 28165426  T
Q  183 tctcgtatata 193  Q
    | |||||||||    
T  28165425 tgtcgtatata 28165415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 421
Target Start/End: Complemental strand, 6186732 - 6186572
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| |||| ||||||||||||||||||||| |||| |||||||||||||| | ||||  ||||||||||| || || ||||| || ||| ||||||    
T  6186732 actgaggcccct-gaaaccaataaaaattaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcaaaaacaaatct 6186634  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaa 421  Q
    |||  ||||| |||| |||| | |||||||||||  ||||||| ||||| |||||| |||||    
T  6186633 tgtgtcaaaccgttgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaa 6186572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 6705306 - 6705383
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcct 338  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||||  | |||| ||||||||||||||||    
T  6705306 cactgagggccctcgaaaccaataaaaactaaacaccaaaccaagaagtcatcaccaaaaaccaaagtctaaacgcct 6705383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 421
Target Start/End: Complemental strand, 14951298 - 14951138
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| |||| |||||||||||||| ||||||  ||| ||||||| |||||| | || |  ||||||||||| || || ||||| || ||| ||||||    
T  14951298 actgaggcccct-gaaaccaataaaaactaaacacaaaaaccaagaaatcatctccaaacactaaagtctaaacacccgcgcaatagcagaaacaaatct 14951200  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaa 421  Q
    ||| |||||| |||| |||| | || ||||||||||||||||||||||| |||||| |||||    
T  14951199 tgtgccaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaa 14951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 430
Target Start/End: Complemental strand, 38531808 - 38531651
Alignment:
Q  274 cgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactg 371  Q
    ||||||||||||||| |||||| |||| |||| ||||||||| | |||| ||| |||||||| |||||  | || || ||| ||||||||| | ||||||    
T  38531808 cgaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaacgtctaaacacctgcgtagtagcagaaacaaatcttgtgctaaactg 38531709  T
Q  372 ttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacacctt 430  Q
    ||| |||| | || ||||| ||||||||||||||||| |||| | ||||||| ||||||    
T  38531708 ttgcaaaacc-ctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcacctt 38531651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 36592512 - 36592601
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaag 174  Q
    ||||||||||||||||||||||| ||| || || |||||||| | |||||||| |||||||| ||||||| | |  ||||||||||||||||    
T  36592512 aagaagctaaaatggaatttattaaaatcaaagtgaatcctaaccagcacaaggaatgctagactaggagtcgt--aaagtaacatacaaag 36592601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 33543927 - 33544033
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| |||||||| |||||| | ||||||||| | ||||  |||||| ||| | ||||||||||||| |  |||||||||| ||||||||    
T  33543927 aagaagttaaaatgaaatttattcaaaacagaaagaatcctaactagcatgagaaatactaagttaggagacttaaataacaacatacaaaagaaaagtg 33544026  T
Q  183 tctcgta 189  Q
    | |||||    
T  33544027 tgtcgta 33544033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 6186933 - 6186832
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaa-aagtaacatacaaaggaaaagt 181  Q
    |||||||||||||| |||||||| ||||   | ||||||||||| |||||||| |||||||| ||||||  ||||||  || |||||||||| |||||||    
T  6186933 aagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaagcaatgctagactaggaatcttaaagtagaaacatacaaatgaaaagt 6186834  T
Q  182 gt 183  Q
    ||    
T  6186833 gt 6186832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 1532826 - 1532927
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||||||| ||||| | |||||||||  ||| ||||| ||| ||| | ||||||| ||||| || |||||||||| ||||||||    
T  1532826 aagaaggtaaaatgaaatttatttcaaacacaaagaatcctaataagtacaaggaat-ctaagttaggagatttaaagagcaacatacaaacgaaaagtg 1532924  T
Q  183 tct 185  Q
    |||    
T  1532925 tct 1532927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 423
Target Start/End: Original strand, 9910292 - 9910441
Alignment:
Q  276 aaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgtt 373  Q
    |||| |||||||| |||||| || |||||| ||||||||| | |||| |||||||||||||||||  ||||| || ||| || ||||||  ||||| |||    
T  9910292 aaactaataaaaactaaacaccataaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgacaaaccgtt 9910391  T
Q  374 gaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaacc 423  Q
    | |||| |  |  |||||||| ||||| ||||||| |||||| |||||||    
T  9910392 gcaaaacccatcaaaaataactatcaatcctaccaaaaactcgtgtaacc 9910441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 6705381 - 6705467
Alignment:
Q  427 ccttaagcaagtcacactgtctaacatccatgta-ttgaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    |||||| |||| ||||| |||||||||||||||| |||||||| | ||||||||| ||||||||| || ||||||  |||||| ||||    
T  6705381 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacattatcaacaac-aaactcatataagaaaaccttcaaaaaacata 6705467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 38531996 - 38531919
Alignment:
Q  118 aatcctagcaagcacaagaaatgctaggctaggagacttaaaa-agtaacatacaaaggaaaagtgtctcgtatatat 194  Q
    ||||||||| |||||||| || ||||| ||||||| ||||||  || ||||||||||| |||||||| | ||||||||    
T  38531996 aatcctagcgagcacaaggaacgctagactaggagtcttaaagtagcaacatacaaagaaaaagtgtgttgtatatat 38531919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 26332039 - 26331927
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||    
T  26332039 aagaagttaaaatgaaatttatttaaaacaaatagaatcctagcaagcacaaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtg 26331940  T
Q  183 tctcgtatatatg 195  Q
    | |||||||||||    
T  26331939 tttcgtatatatg 26331927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 450
Target Start/End: Complemental strand, 24867520 - 24867339
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaa 368  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||| | |||| |||||||||||||| ||| ||||| |||||| ||||||||| ||||     
T  24867520 ccctcgaaaccaataaaaactaaacgtcaaacaaagaagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgccaat 24867421  T
Q  369 ctgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaa 450  Q
    | ||||||||  |||| ||||||||||||||||| ||  | |||| ||||||||| |||||||| |||| ||||| ||||||    
T  24867420 ccgttgaaaatcctctccaaaataaccatcaaacatattaaaaacccatgtaaccgcaccttaaacaagccacaccgtctaa 24867339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 270 - 442
Target Start/End: Complemental strand, 26331852 - 26331678
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaa-gtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaa 367  Q
    ||||||||||||||||||| || ||| |||||||| || ||||||| | |||| ||||||||||||| |||  ||||| |||||| ||||||||||| ||    
T  26331852 ccctcgaaaccaataaaaactagacaccaaaccaataaagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaa 26331753  T
Q  368 actgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcaca 442  Q
    |  |||||||||  |||  ||||||| |||||||||||||| |||||||||||||| |||||||| |||| ||||    
T  26331752 atcgttgaaaaacatctctaaaataatcatcaaacctaccaaaaactcatgtaaccgcaccttaaacaagccaca 26331678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 270 - 442
Target Start/End: Complemental strand, 26331510 - 26331337
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaa 368  Q
    ||||||||||||||||||| || ||| |||||||| ||||||||| | |||| ||||||||||||| |||  ||||| |||||| ||||||||||| |||    
T  26331510 ccctcgaaaccaataaaaactagacaccaaaccaataagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaa 26331411  T
Q  369 ctgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcaca 442  Q
      |||||||||  |||  ||||||| |||||||||||||| |||  ||||||||| |||||||| |||| ||||    
T  26331410 tcgttgaaaaacatctctaaaataatcatcaaacctaccaaaaatccatgtaacctcaccttaaacaagccaca 26331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 26331664 - 26331585
Alignment:
Q  116 agaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgtatatatg 195  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  26331664 agaatcctagcaagcacaaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtgtttcgtatatatg 26331585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 40680507 - 40680618
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| |||||||||||||||   ||| || ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||    
T  40680507 aagaaggtaaaatgaaatttatttaaaacactaagattc-tagcaagcacaaggaatgctaggttaagagacttaaaaagcaacatacaaaggaaaagtg 40680605  T
Q  183 tctcgtatatatg 195  Q
    |  ||||||||||    
T  40680606 tgccgtatatatg 40680618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 42220945 - 42221041
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaa 179  Q
    |||||||||||||| |||| ||| |||||  | ||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||||||||    
T  42220945 aagaagctaaaatgaaattaattcaaaacgcaaagaatcctagctagcacgaggaaggctaggctaggagacttaaatagcaacatacaaaggaaaa 42221041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 415
Target Start/End: Original strand, 12155942 - 12156096
Alignment:
Q  262 actgaggaccctcgaaaccaataaaaattaaacatcaaac-caagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatct 359  Q
    ||||||| |||| ||||||||||||||||||||| ||||  ||||||||||||| | ||||  ||||||||||| || || ||||| || ||| ||||||    
T  12155942 actgaggcccct-gaaaccaataaaaattaaacaccaaaatcaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatct 12156040  T
Q  360 tgtaccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactc 415  Q
    |||  |||||  ||| |||| | || ||||||||||||||||||||||| ||||||    
T  12156041 tgtgtcaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactc 12156096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 24867687 - 24867577
Alignment:
Q  85 gaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtc 184  Q
    |||| ||||||| ||||||||||||||| | ||||| |||||||||||||| |||| |||| ||| |||||||||||| | | ||||||| |||| |||     
T  24867687 gaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttagaagacttaaaaagcagcgtacaaagaaaaaatgtg 24867588  T
Q  185 tcgtatatatg 195  Q
    |||| ||||||    
T  24867587 tcgtgtatatg 24867577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 11470348 - 11470461
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaa-tcctagcaagcacaagaaatgctaggctaggagacttaaaa-agtaacatacaaaggaaaag 180  Q
    |||||||||||||| ||||||||||||||| | | || | | | | |||| ||||||||||| |||||||| ||||||| || |||||||||||||||||    
T  11470348 aagaagctaaaatgaaatttatttaaaacacaaaaaaattccaacgagcataagaaatgctaagctaggagtcttaaaatagcaacatacaaaggaaaag 11470447  T
Q  181 tgtctcgtatatat 194  Q
    ||| ||||||||||    
T  11470448 tgtgtcgtatatat 11470461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 34574764 - 34574654
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||  |||||| | ||||| || ||||||||| | ||||| || |||||||| |||||| ||||||| || ||||||||||| |||||||    
T  34574764 aagaagttaaaataaaatttactcaaaacgtaaagaatcctatctagcacgagtaatgctagactaggatacttaaatagcaacatacaaagaaaaagtg 34574665  T
Q  183 tctcgtatata 193  Q
    | |||||||||    
T  34574664 tgtcgtatata 34574654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 415
Target Start/End: Complemental strand, 40600318 - 40600176
Alignment:
Q  275 gaaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaaaaa-tcttgtaccaaactgt 372  Q
    |||||||||||||| |||||| || |||||| ||||||||| | ||||||||||| | |||||||   ||||| || ||| || |||||| |||||| ||    
T  40600318 gaaaccaataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtatgaacgcctaagcaatagcaaaaacaagtcttgtgccaaaccgt 40600219  T
Q  373 tgaaaaatctcttcaaaataaccatcaaacctaccacaaactc 415  Q
    || |||| |  | ||||||||||||||||||||||| ||||||    
T  40600218 tgcaaaacccgtccaaaataaccatcaaacctaccaaaaactc 40600176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 11470545 - 11470700
Alignment:
Q  275 gaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaaa--aatcttgtaccaaactg 371  Q
    ||||||||||||||  |||||||||| |||  || ||||||   |||| |||| ||||||| || |||||||| ||  |||  |||||||| |||||| |    
T  11470545 gaaaccaataaaaacaaaacatcaaaaccataaaatcatctcaaaaaaccaaaatctaaactcccgcacaatatcaagaaacaaatcttgtgccaaaccg 11470644  T
Q  372 ttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacac 427  Q
    ||| |||| | |||||||||| | ||||||||||||| |||||| |||||||||||    
T  11470645 ttgcaaaaccccttcaaaatagctatcaaacctaccaaaaactcgtgtaaccacac 11470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 23247335 - 23247244
Alignment:
Q  98 aatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtctcgta 189  Q
    |||||||| ||||| || | |||||| || ||||| |||||||||| |||| |||| ||||| ||||||||||||| ||||||||| |||||    
T  23247335 aatttattcaaaacgtaaaaaatccttgctagcacgagaaatgctatgctaagagatttaaatagtaacatacaaaagaaaagtgtgtcgta 23247244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 40680672 - 40680745
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacg 335  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||| |||||||  | |||| |||||||||||||    
T  40680672 cactgagggccctcgaaaccaataaaaactaaacaccaaaccaag-agtcatcaccaaaaaccaaagtctaaacg 40680745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 513
Target Start/End: Original strand, 40680747 - 40680832
Alignment:
Q  428 cttaagcaagtcacactgtctaacatccatgtatt-gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||| |||| ||||| ||||||||| |||||||| |||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  40680747 cttaaacaagccacaccgtctaacattcatgtatttgaaaaccttatcaacaacaaa-ctcatagaagaaaaccttcaaaaagcata 40680832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 42269430 - 42269320
Alignment:
Q  85 gaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtgtc 184  Q
    |||||||||||| | |||||| |||||  | |||||| ||||||||| ||| ||||||  ||||||||||||||  || |||||||| || ||||||||     
T  42269430 gaagctaaaatgaagtttattcaaaacgcaaagaatcttagcaagcataaggaatgcttagctaggagacttaagtaggaacatacagagaaaaagtgtg 42269331  T
Q  185 tcgtatatatg 195  Q
    | |||||||||    
T  42269330 ttgtatatatg 42269320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 508
Target Start/End: Complemental strand, 34574392 - 34574327
Alignment:
Q  444 tgtctaacatccatgtatt-ga-aaacctcatcaacaacaaaactcatagaacaaaacccacaaaaa 508  Q
    ||||||||||||||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  34574392 tgtctaacatccatgtatttgagaaaccacatcaacaacaaa-ctcatagaagaaaacccacaaaaa 34574327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 415
Target Start/End: Complemental strand, 42269214 - 42269097
Alignment:
Q  299 aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaaaaa-tcttgtaccaaactgttgaaaaatctcttcaaaataaccat 397  Q
    |||||| ||||||||| | |||| |||| ||||||||||||  |||||  | ||| || |||||| ||||||||||| |||| |  | ||||||||||||    
T  42269214 aaccaaaaagtcatctccaaaaaccaaattctaaacgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccat 42269115  T
Q  398 caaacctaccacaaactc 415  Q
    ||| ||||||| ||||||    
T  42269114 caatcctaccaaaaactc 42269097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 12155740 - 12155840
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaa-aagtaacatacaaaggaaaagt 181  Q
    |||||||||||||| |||||||| ||||   | ||||||||||| | |||||| |||||||| ||||||  ||||||  || ||||||||||| ||||||    
T  12155740 aagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgatcacaaggaatgctagactaggaatcttaaagtagcaacatacaaagaaaaagt 12155839  T
Q  182 g 182  Q
    |    
T  12155840 g 12155840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 30248160 - 30248259
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||| || |||||  | ||||||||| | ||||| |||||| ||| |||| |||||||||| || ||||||||||| |||||||    
T  30248160 aagaagttaaaatgaaattt-ttcaaaacgcaaagaatcctaactagcacgagaaatactaagctatgagacttaaatagcaacatacaaagaaaaagtg 30248258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 40600511 - 40600411
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||  | |||||| |||||  | ||||||||||||| || ||| |||| | || ||||||||||||  || || ||||||||||||||||    
T  40600511 aagaagctaaaataaagtttattcaaaacgcaaagaatcctagcaaacataaggaatgtttggttaggagacttaagtaggaatatacaaaggaaaagtg 40600412  T
Q  183 t 183  Q
    |    
T  40600411 t 40600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 42221119 - 42221193
Alignment:
Q  264 tgaggaccctcgaaaccaataaaaattaaacatc-aaaccaagaagtcatcttccaaaatcaaagtctaaacgcc 337  Q
    ||||| ||| ||||||||||||||| |||||| | ||||||  ||||||||| |||||| |||||| ||||||||    
T  42221119 tgagggcccccgaaaccaataaaaactaaacaccaaaaccacaaagtcatctcccaaaaccaaagtataaacgcc 42221193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 30248347 - 30248411
Alignment:
Q  274 cgaaaccaataaaaattaaacatc-aaaccaagaagtcatcttccaaaatcaaagtctaaacgcc 337  Q
    ||||||||||||||| |||||| | ||||||  ||||||||| |||||| |||| ||||||||||    
T  30248347 cgaaaccaataaaaactaaacaccaaaaccataaagtcatctcccaaaaacaaactctaaacgcc 30248411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 513
Target Start/End: Original strand, 9566640 - 9566790
Alignment:
Q  364 ccaaactgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt- 462  Q
    |||||| ||| |||||  ||| ||||||||||||||||||||||| |||| ||||||||| |||||||| |||   ||||   ||||||||||||||||     
T  9566640 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaactacaccagctaacatccatgtattt 9566739  T
Q  463 gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  9566740 gaaaacctcatcaacaacaaaactcgtagaagaaaacccacaaaaagcata 9566790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 498
Target Start/End: Complemental strand, 10670446 - 10670231
Alignment:
Q  275 gaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatc-aaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgt 372  Q
    |||||||||||||| |||||| ||||| |||||||||| | |||||||| |||||||||| |||||| ||||| || ||| |||||||||  ||||| ||    
T  10670446 gaaaccaataaaaactaaacaccaaacaaagaagtcatat-ccaaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaaccgt 10670348  T
Q  373 tgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtattgaaaacctca 472  Q
    ||||||| |||| ||||||||| |||||| |||| | |||  ||||||||| |||||||| |||||||||| ||||||||         |||||||| ||    
T  10670347 tgaaaaacctctccaaaataactatcaaatctactaaaaatccatgtaaccgcaccttaaacaagtcacaccgtctaaca---------tgaaaacccca 10670257  T
Q  473 tcaacaacaaaactcatagaacaaaa 498  Q
    ||||||||||||||||||||| ||||    
T  10670256 tcaacaacaaaactcatagaagaaaa 10670231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 78406 - 78518
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||||||||||| | |||||| |||||  | ||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  78406 aagaagctaaaatgaagtttattcaaaacgcaaagaatcctagcaagcacaagaaatgcttggctaggagacttaaataggaacatacaaaggaaaagtg 78505  T
Q  183 tctcgtatatatg 195  Q
       ||||||||||    
T  78506 agccgtatatatg 78518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 31026892 - 31026778
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaaca--tacaaaggaaaag 180  Q
    |||||| ||||||| |||||||||||||||   |||||||||||||||| |||||||| |||||||| |||||||||||| ||||  |||||||||||||    
T  31026892 aagaagttaaaatgaaatttatttaaaacactaagaatcctagcaagcataagaaatgttaggctagaagacttaaaaagcaacatttacaaaggaaaag 31026793  T
Q  181 tgtctcgtatatatg 195  Q
    |||  ||||||||||    
T  31026792 tgtgccgtatatatg 31026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 430
Target Start/End: Original strand, 30845097 - 30845254
Alignment:
Q  275 gaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaactgt 372  Q
    |||||||||||||| |||||| |||| |||| ||||||||||| |||| |||||||||||| ||  | ||||| || ||| |||||||||  ||||| ||    
T  30845097 gaaaccaataaaaactaaacaccaaaaccaaaaagtcatcttcaaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccgt 30845196  T
Q  373 tgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacacctt 430  Q
    || |||| | || ||||||||||||||||||||||| |||  || |||||| ||||||    
T  30845197 tgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcacctt 30845254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 271 - 422
Target Start/End: Original strand, 10772565 - 10772718
Alignment:
Q  271 cctcgaaaccaataaaaattaaacatca-aaccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaaa 368  Q
    |||| ||||||||||||| |||||| || |||||| ||||||||| | ||||||||||||||||||| ||  ||||  || ||| || |||||| |||||    
T  10772565 cctcaaaaccaataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtctaaacgcttgagcaatggcagaaacaagtcttgtgccaaa 10772664  T
Q  369 ctgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaac 422  Q
    | |||| |||| |  | ||||||||||||||||||||||| |||| | ||||||    
T  10772665 ccgttgcaaaacccatccaaaataaccatcaaacctaccaaaaacccgtgtaac 10772718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 24350641 - 24350482
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcctgcacaataacataaa-aaatcttgtaccaa 367  Q
    |||| ||||||||| |||| |||||| |||| |||||||||||||| | ||||  ||||||||||| || || ||||| || ||| |||| |||| | ||    
T  24350641 cccttgaaaccaatcaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaacaaattttgtgctaa 24350542  T
Q  368 actgttgaaaaatctcttcaaaataaccatcaaacctaccacaaactcatgtaaccacac 427  Q
    || |||| |||| | || ||||||||||||||||| ||||| |||||| ||||| |||||    
T  24350541 accgttgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacac 24350482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 10670618 - 10670507
Alignment:
Q  83 aagaagctaaaatggaa-tttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagt 181  Q
    |||||| |||||||||| ||||||||||||  |||  || |||  ||||||||| ||||||| | |||||||||||||||  ||||||||||||||||||    
T  10670618 aagaagttaaaatggaaatttatttaaaacccaga--attctaataagcacaagtaatgctaagttaggagacttaaaaaacaacatacaaaggaaaagt 10670521  T
Q  182 gtctcgtatatatg 195  Q
     | |||||||||||    
T  10670520 ttgtcgtatatatg 10670507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 11366388 - 11366497
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| ||||||||||||||| |||  ||  ||||||||| ||| |||||||  |||  ||||||||| || |||||||||||||||||||    
T  11366388 aagaagttaaaatgaaatttatttaaaacacaga--attttagcaagcataaggaatgctaacctaaaagacttaaagagcaacatacaaaggaaaagtg 11366485  T
Q  183 tctcgtatatatg 195  Q
    || ||||||||||    
T  11366486 tc-cgtatatatg 11366497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 32748160 - 32748060
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| ||||||| |||||||| ||||  || |||||| || | |||||||| |||||||||||| || ||||||| || |||||||||||||| ||||    
T  32748160 aagaagttaaaatgaaatttattcaaaatgtaaagaatcatatctagcacaaggaatgctaggctaagatacttaaatagcaacatacaaaggaatagtg 32748061  T
Q  183 t 183  Q
    |    
T  32748060 t 32748060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 9566470 - 9566527
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatg 140  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||||||||||| ||||    
T  9566470 aagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaatg 9566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 31026724 - 31026647
Alignment:
Q  261 cactgaggaccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaacgcct 338  Q
    |||||||| ||||| ||||||||||||| |||  | |||||||| ||||| ||| | |||| ||||||||||||||||    
T  31026724 cactgagggccctcaaaaccaataaaaactaataaccaaaccaataagtcgtctccaaaaaccaaagtctaaacgcct 31026647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 11366586 - 11366630
Alignment:
Q  388 aaataaccatcaaacctaccacaaactcatgtaaccacaccttaa 432  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||    
T  11366586 aaataaccatcaaacctaccaaaaactcatgtaaccgcacattaa 11366630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 24842694 - 24842762
Alignment:
Q  127 aagcacaagaaatgctaggctaggagacttaaaa-agtaacatacaaaggaaaagtgtctcgtatatat 194  Q
    ||||||||  |||||||  ||||||| ||||||| || ||||||||||||| |||||| ||||||||||    
T  24842694 aagcacaaagaatgctaaactaggagtcttaaaatagcaacatacaaaggagaagtgtgtcgtatatat 24842762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 2665 - 2777
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    ||||| |||||||| || ||||| |||||  | |||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||    
T  2665 aagaaactaaaatgaaacttattcaaaacgcaaagaatcctagcaagcacaaggaatgctagactaggagacttaacaagcaacatacaaaggaaaagtg 2764  T
Q  183 tctcgtatatatg 195  Q
    |  ||||||||||    
T  2765 tgccgtatatatg 2777  T

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Target: scaffold0083; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 2856 - 2967
Alignment:
Q  270 ccctcgaaaccaataaaaattaaacatcaaaccaagaagtcatcttccaaaatcaaagtctaaac--gcctgcacaataacataaa-aaatcttgtacca 366  Q
    |||||||||| ||||||||||||||| || ||||| || |||||| | |||| ||||||||||||  ||| |  ||||| || ||| ||||||||| |||    
T  2856 ccctcgaaactaataaaaattaaacaccataccaaaaattcatctccaaaaaccaaagtctaaacacgcccgtgcaatagcagaaacaaatcttgtgcca 2955  T
Q  367 aactgttgaaaa 378  Q
    ||||||||||||    
T  2956 aactgttgaaaa 2967  T

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Target: scaffold0974 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 3030 - 2915
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaaagtaacatacaaaggaaaagtg 182  Q
    |||||| |||||||   ||||||||||| | | |||||||||||||||||||| |||| | |||||||||||||||  || |||||| ||| ||||||||    
T  3030 aagaagataaaatgaggtttatttaaaagacaaagaatcctagcaagcacaaggaatgtttggctaggagacttaagtaggaacatataaaagaaaagtg 2931  T
Q  183 tctcgtatatatgtgg 198  Q
    | ||||||||||||||    
T  2930 tgtcgtatatatgtgg 2915  T

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Target: scaffold0725 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 953 - 1020
Alignment:
Q  447 ctaacatccatgtatt-gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  953 ctaacatccgtgtatttgaaaacctcatcaacaacaaaactcgtagaagaaaacccacaaaaaacata 1020  T

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Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 269590 - 269667
Alignment:
Q  83 aagaagctaaaatggaatttatttaaaacatagagaatcctagcaagcacaagaaatgctaggctaggagacttaaaa 160  Q
    |||||| ||||||| ||||||||||||||  |||||||  ||||||||| ||||||||||| ||||| ||||||||||    
T  269590 aagaagttaaaatgaaatttatttaaaactcagagaattttagcaagcataagaaatgctaagctagaagacttaaaa 269667  T

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Target: scaffold0005; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 269783 - 269857
Alignment:
Q  388 aaataaccatcaaacctaccacaaactcatgtaaccacaccttaagcaagtcacactgtctaacatccatgtatt 462  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| |||  ||||||  ||||||||| ||||||    
T  269783 aaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacactagctaacatccgtgtatt 269857  T

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Target: scaffold0088 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 26868 - 26934
Alignment:
Q  448 taacatccatgtatt-gaaaacctcatcaacaacaaaactcatagaacaaaacccacaaaaagcata 513  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||||||| ||||    
T  26868 taacatccgtgtatttgaaaacctcatcaacaacaaaattcgtagaagaaaacccacaaaaaacata 26934  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 2599 - 2673
Alignment:
Q  264 tgaggaccctcgaaaccaataaaaattaaacatcaaa-ccaagaagtcatcttccaaaatcaaagtctaaacgcc 337  Q
    ||||| || |||||| ||||||||  ||||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  2599 tgagggccttcgaaatcaataaaatctaaacatcaaaaccacaaagtcatctcccaaaatcaaagtctaaacgcc 2673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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