View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029-Insertion-7 (Length: 495)

Name: NF5029-Insertion-7
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029-Insertion-7
NF5029-Insertion-7
[»] chr2 (1 HSPs)
chr2 (8-495)||(45483412-45483899)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 495
Target Start/End: Original strand, 45483412 - 45483899
Alignment:
Q  8 aataataacatataccttcttactactcctgttttaacaacataacagataaatagaacttttctgaaccaacatggcatacgaataagtaccttgatta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45483412 aataataacatataccttcttactactcctgttttaacaacataacagataaatagaacttttctgaaccaacatggcatacgaataagtaccttgatta 45483511  T
Q  108 ggaaaagttttcacaactttttcaacttcatccctggatatgccatctttctcatacattctttgaacaatattcagtatatcttcctggttaggctgcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45483512 ggaaaagttttcacaactttttcaacttcatccctggatatgccatctttctcatacattctttgaacaatattcagtatatcttcctggttaggctgcc 45483611  T
Q  208 tatgtcacatttacaacaacattttagggaagagtgacatagcttacttagtttcatttcatgaaatcagatacttcagagtcattgcattagcaatgtg 307  Q
    | |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45483612 tgtgtcacatttacaacaacatttcagggaagaatgacatagcttacctagtttcatttcatgaaatcagatacttcagagtcattgcattagcaatgtg 45483711  T
Q  308 atagatgaggtaatcatgctaaacatagctttatcaatcacatcgatcatgaaatttcattccacagtactaagcaaaaattcaactaaaacatttaaac 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45483712 atagatgaggtaatcatgctaaacatagctttatcaatcacatcgatcatgaaatttcattccacagtactaagcaaaaattcaaccaaaacatttaaac 45483811  T
Q  408 cagcaatgcacctggcaaaaactaccataattaaaatacatgaatggcaagcaataatcctagaataagagaaatgataatttaccag 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45483812 cagcaatgcacctggcaaaaactaccataattaaaatacatgaatggcaagcaataatcctagaataagagaaatgataatttaccag 45483899  T

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