View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029-Insertion-9 (Length: 426)

Name: NF5029-Insertion-9
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029-Insertion-9
NF5029-Insertion-9
[»] chr7 (2 HSPs)
chr7 (8-322)||(7321290-7321594)
chr7 (353-426)||(7321184-7321259)
[»] chr5 (1 HSPs)
chr5 (8-148)||(19900081-19900215)
[»] chr1 (2 HSPs)
chr1 (37-166)||(34799817-34799946)
chr1 (30-152)||(42261814-42261933)
[»] chr3 (1 HSPs)
chr3 (59-166)||(30218554-30218660)
[»] chr6 (1 HSPs)
chr6 (56-152)||(3582999-3583091)
[»] chr8 (1 HSPs)
chr8 (110-152)||(31448339-31448379)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 7321594 - 7321290
Alignment:
Q  8 ataaattgtcttcatacgtacccatcatatacattcatcaccataaaacataaaagtcataaggaaactctcaataaatttacaaccattgttcaactct 107  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||    
T  7321594 ataaattgtcttcatac----ccatcatatacattcatcaccataaaacataaaagtcataaggaaactcttaataaatttacaaccactgttcaacact 7321499  T
Q  108 ctcaaaatacataaagagttataaggaaactctcaaaataagttttacaagaaacacttcaatattatgtactttttttaatnnnnnnnnnnnnnnnnnn 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||                      
T  7321498 ctcaaaatacataaagagttataaggaaactctcaaaataagttttataagaaacacttcaacattatgtactttttttaat------aaaaaaaaaaaa 7321405  T
Q  208 nncattatgtactttttgtggttctttcattatataataaattctgatcttcaaatttgtttcagaaaaatattattatagtctcaattgttagattaat 307  Q
      |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7321404 aacattatgtactttttgtgcttctttcattatataataaattttgatcttcaaatttgtttcagaaaaatattattatagtctcaattgttagattaat 7321305  T
Q  308 ccaataacttagtac 322  Q
    |||||||||||||||    
T  7321304 ccaataacttagtac 7321290  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 7321259 - 7321184
Alignment:
Q  353 tcattttacaaacttggatcgttgcaataaaacagtaacattgtaaaaacttggatag--ttgctcaccttgtaca 426  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||    
T  7321259 tcattttacaaacttggatcgttgcaataaaacaataacattgtaaaaacttggatggttttgctcaccttgtaca 7321184  T

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Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 19900081 - 19900215
Alignment:
Q  8 ataaattgtcttcatacgtacccatcatatacattcatcaccataaaacataaaagtcataaggaaactctcaataaatttacaaccattgttcaactct 107  Q
    |||||||||||||||||    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||  ||    
T  19900081 ataaattgtcttcatac----ccatcacatacattcatcaccataaaacataaaagttataaggaaactctcaataagttgacaaccattgttcaa--ct 19900174  T
Q  108 ctcaaaatacataaagagttataaggaaactctcaaaataa 148  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  19900175 ctcaaaatacataaagagtcataaggaaaccctcaaaataa 19900215  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 34799817 - 34799946
Alignment:
Q  37 tacattcatcaccataaaacataaaa-gtcataaggaaactctcaataaatttacaaccattgttcaactctctcaaaatacataaagagttataaggaa 135  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||| |||||  ||||||||    
T  34799817 tacattcatcaccataaaacataaaaaggcataaggaaactcttaataagtttacaaccattgttcaacactcccaaaatacat-aagagccataaggaa 34799915  T
Q  136 actctcaaaataagttttacaagaaacactt 166  Q
    ||||| ||||||||||| | |||||||||||    
T  34799916 actcttaaaataagtttcataagaaacactt 34799946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 42261933 - 42261814
Alignment:
Q  30 catcatatacattcatcaccataaaacataaaagtcataaggaaactctcaataaatttacaaccattgttcaactctctcaaaatacataaagagttat 129  Q
    ||||| || ||||||||||||||||||||||| ||||  |||| ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||| ||    
T  42261933 catcacatgcattcatcaccataaaacataaacgtca--aggatactttcaataaatttacaaccattgttcaacactcttaaaatacataaa-agtcat 42261837  T
Q  130 aaggaaactctcaaaataagttt 152  Q
    |||||||||||||||||||||||    
T  42261836 aaggaaactctcaaaataagttt 42261814  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 30218660 - 30218554
Alignment:
Q  59 aaaagtcataaggaaactctcaataaatttacaaccattgttcaactctctcaaaatacataaagagttataaggaaactctcaaaataagttttacaag 158  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||| |||||| |||||||||| ||| ||||||| || | |||    
T  30218660 aaaagtcataaggaaactctcaataagtttacaactattgttcaacactcttaaaatacat-aagagtcataaggaaacactcgaaataagcttcataag 30218562  T
Q  159 aaacactt 166  Q
    ||||||||    
T  30218561 aaacactt 30218554  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 3583091 - 3582999
Alignment:
Q  56 cataaaagtcataaggaaactctcaataaatttacaaccattgttcaactctctcaaaatacataaagagttataaggaaactctcaaaataagttt 152  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||  ||||| | ||| |||||||||||||||||||    
T  3583091 cataaaagtcataaggaaactctcaataagtttacaaccattgttcaac--tctcaaaatacat--agagtcacaagaaaactctcaaaataagttt 3582999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 31448379 - 31448339
Alignment:
Q  110 caaaatacataaagagttataaggaaactctcaaaataagttt 152  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  31448379 caaaatacataaag--ttataaggaaactctcaaaataagttt 31448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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