View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029_high_1 (Length: 568)

Name: NF5029_high_1
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029_high_1
NF5029_high_1
[»] chr2 (20 HSPs)
chr2 (172-404)||(1895402-1895634)
chr2 (180-404)||(17281850-17282075)
chr2 (186-404)||(1551510-1551728)
chr2 (172-402)||(17375271-17375501)
chr2 (291-404)||(3921584-3921697)
chr2 (481-552)||(1895254-1895325)
chr2 (20-94)||(1895712-1895786)
chr2 (485-546)||(1551809-1551870)
chr2 (487-544)||(17282158-17282215)
chr2 (331-404)||(34660278-34660351)
chr2 (485-544)||(3921444-3921503)
chr2 (485-542)||(17375153-17375210)
chr2 (229-281)||(3921684-3921736)
chr2 (485-544)||(4869507-4869566)
chr2 (210-276)||(4869709-4869775)
chr2 (331-404)||(4869637-4869710)
chr2 (491-543)||(14950835-14950887)
chr2 (51-94)||(1551367-1551410)
chr2 (56-94)||(17281727-17281765)
chr2 (172-217)||(4140576-4140621)
[»] chr4 (19 HSPs)
chr4 (172-404)||(53202258-53202490)
chr4 (172-407)||(47518349-47518584)
chr4 (172-404)||(23054132-23054363)
chr4 (224-382)||(6410005-6410164)
chr4 (313-404)||(34227057-34227148)
chr4 (485-544)||(53202118-53202177)
chr4 (485-544)||(47518662-47518721)
chr4 (481-549)||(23054441-23054508)
chr4 (485-546)||(34227204-34227265)
chr4 (46-94)||(53202568-53202616)
chr4 (334-399)||(12469342-12469407)
chr4 (491-543)||(45873102-45873154)
chr4 (497-540)||(12489216-12489259)
chr4 (240-286)||(24957572-24957618)
chr4 (334-382)||(12466698-12466746)
chr4 (491-543)||(14441115-14441167)
chr4 (491-541)||(12130516-12130566)
chr4 (491-543)||(38093215-38093267)
chr4 (491-543)||(55728692-55728744)
[»] chr6 (5 HSPs)
chr6 (186-404)||(20740570-20740788)
chr6 (172-404)||(21881459-21881691)
chr6 (481-546)||(20740453-20740518)
chr6 (485-544)||(21881318-21881377)
chr6 (491-543)||(32747716-32747768)
[»] chr5 (27 HSPs)
chr5 (172-404)||(7766903-7767135)
chr5 (176-407)||(18696922-18697155)
chr5 (183-404)||(27169997-27170219)
chr5 (294-381)||(41355543-41355630)
chr5 (481-544)||(38958379-38958442)
chr5 (172-276)||(7271894-7271995)
chr5 (172-281)||(41355444-41355553)
chr5 (485-540)||(41355722-41355777)
chr5 (333-404)||(38958230-38958301)
chr5 (338-404)||(7271826-7271892)
chr5 (331-404)||(6030388-6030461)
chr5 (485-544)||(7271708-7271767)
chr5 (210-276)||(6030323-6030389)
chr5 (210-276)||(26656829-26656895)
chr5 (210-276)||(26928416-26928482)
chr5 (485-539)||(27170275-27170329)
chr5 (491-543)||(26331217-26331269)
chr5 (485-544)||(26656630-26656688)
chr5 (485-544)||(26928217-26928275)
chr5 (485-540)||(40599985-40600040)
chr5 (505-543)||(42221388-42221426)
chr5 (485-540)||(7767203-7767255)
chr5 (491-543)||(24867205-24867257)
chr5 (331-381)||(26656780-26656830)
chr5 (331-381)||(26928367-26928417)
chr5 (20-49)||(18697327-18697356)
chr5 (46-94)||(18697228-18697276)
[»] chr8 (9 HSPs)
chr8 (172-407)||(10408814-10409049)
chr8 (180-404)||(5994622-5994846)
chr8 (224-404)||(6444027-6444208)
chr8 (491-543)||(5994485-5994537)
chr8 (485-544)||(10408702-10408761)
chr8 (491-543)||(15050162-15050214)
chr8 (496-540)||(3763045-3763089)
chr8 (51-83)||(10409137-10409169)
chr8 (491-543)||(25142902-25142954)
[»] chr1 (17 HSPs)
chr1 (172-377)||(34117991-34118198)
chr1 (172-282)||(39708920-39709029)
chr1 (180-281)||(34655070-34655171)
chr1 (218-381)||(11407928-11408092)
chr1 (291-407)||(34654967-34655083)
chr1 (485-544)||(34654830-34654889)
chr1 (293-403)||(26236671-26236781)
chr1 (291-381)||(39709015-39709105)
chr1 (210-276)||(615825-615891)
chr1 (331-404)||(615753-615826)
chr1 (481-544)||(39709180-39709243)
chr1 (486-546)||(34117896-34117955)
chr1 (485-538)||(615638-615691)
chr1 (491-540)||(11814695-11814744)
chr1 (491-539)||(2077483-2077531)
chr1 (491-543)||(14351174-14351226)
chr1 (46-86)||(39708650-39708690)
[»] chr7 (4 HSPs)
chr7 (181-404)||(3302567-3302790)
chr7 (485-544)||(11698554-11698613)
chr7 (485-544)||(3302427-3302486)
chr7 (491-543)||(31039000-31039052)
[»] chr3 (6 HSPs)
chr3 (331-404)||(18269763-18269836)
chr3 (485-544)||(43275830-43275890)
chr3 (497-549)||(18269919-18269971)
chr3 (223-276)||(18269711-18269764)
chr3 (491-540)||(31699221-31699270)
chr3 (330-376)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (497-540)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (491-543)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 172 - 404
Target Start/End: Complemental strand, 1895634 - 1895402
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895634 atgcttgtcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 1895535  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1895534 gtgattgatcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtact 1895435  T
Q  372 tcatggtggttttcttggtggtactgattttgg 404  Q
    ||||||||||||||||||||||| |||||||||    
T  1895434 tcatggtggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 180 - 404
Target Start/End: Original strand, 17281850 - 17282075
Alignment:
Q  180 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 279  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  17281850 cggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgga 17281949  T
Q  280 tcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggt 378  Q
    || ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17281950 tcagtcacaatggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggt 17282049  T
Q  379 ggttttcttggtggtactgattttgg 404  Q
    ||||||||||||||| ||||||||||    
T  17282050 ggttttcttggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 186 - 404
Target Start/End: Original strand, 1551510 - 1551728
Alignment:
Q  186 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 285  Q
    ||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |||    
T  1551510 ttgtttgattttcgtgggtctcagactatttgatttgttttctctattggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcagtc 1551609  T
Q  286 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 385  Q
    | |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  1551610 acgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttc 1551709  T
Q  386 ttggtggtactgattttgg 404  Q
    ||||| || ||||||||||    
T  1551710 ttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 172 - 402
Target Start/End: Complemental strand, 17375501 - 17375271
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    |||| |||||||||||||||||||||||||| | ||| |||||||||||  |||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  17375501 atgcctgtcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggttgtggtggaggttatgtttgctcacaacataggtg 17375402  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  17375401 gtgatggatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 17375302  T
Q  372 tcatggtggttttcttggtggtactgatttt 402  Q
    |||||   |||||| ||||||| ||||||||    
T  17375301 tcatgacagttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  291 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 390  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  391 ggtactgattttgg 404  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 552
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  481 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 552  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 1895786 - 1895712
Alignment:
Q  20 tcttcctcacacaaatttcaaatccgccgctccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 94  Q
    |||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||||||||||||    
T  1895786 tcttcctcacacaaatttcaaatccgccacttcaccatacctttccgacgtgcggttgctctctatcgtcgtaaa 1895712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 546  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  487 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 542
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 542  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 3921736 - 3921684
Alignment:
Q  229 ctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 281  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 4869775 - 4869709
Alignment:
Q  210 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||  |||||||||||||||| ||||||||||| || || | |||||||||||||||||    
T  4869775 actatttgattcgttttctctcttggttgcggtggaggttacgtttgatagcaacataggtggtgat 4869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 1551367 - 1551410
Alignment:
Q  51 ccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 94  Q
    |||| |||||||||||||||||||||||||||  ||||||||||    
T  1551367 ccaccgtacctttccgacgtgcggttgctctccgtcgtcgtaaa 1551410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 17281727 - 17281765
Alignment:
Q  56 gtacctttccgacgtgcggttgctctctatcgtcgtaaa 94  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  17281727 gtacctttccgacgtgcggttgctctatgtcgtcgtaaa 17281765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 4140621 - 4140576
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttg 217  Q
    ||||||| |||||||| |||||||||||||||| ||| ||||||||    
T  4140621 atgcttgccggtggttctttggttttcgtgggtctcagactatttg 4140576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 172 - 404
Target Start/End: Complemental strand, 53202490 - 53202258
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53202490 atgcttgtctgtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 53202391  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||  ||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  53202390 gtgacagatcggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtact 53202291  T
Q  372 tcatggtggttttcttggtggtactgattttgg 404  Q
    ||||| ||||||||||||||||  |||||||||    
T  53202290 tcatgatggttttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 172 - 407
Target Start/End: Original strand, 47518349 - 47518584
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  47518349 atgcttgtcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtg 47518448  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||| |||| ||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47518449 gtgatggatcagtcacaatggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtact 47518548  T
Q  372 tcatggtggttttcttggtggtactgattttggatc 407  Q
    |||||||||||||||||||| | |||||||||||||    
T  47518549 tcatggtggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 23054132 - 23054363
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23054132 atgcttgtcagtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 23054231  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||| |||| |||| |||||| ||| ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||    
T  23054232 gtgatggatcagtcacgatggt-gtgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgct 23054330  T
Q  372 tcatggtggttttcttggtggtactgattttgg 404  Q
    | |||| ||||||| ||||||| ||||||||||    
T  23054331 ttatggcggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 6410164 - 6410005
Alignment:
Q  224 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 322  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| ||||||||| || ||||| ||| | ||| ||||  ||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttat 6410065  T
Q  323 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 382  Q
    || ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410064 gatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  313 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 485 - 544
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  481 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 549  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 546  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 53202616 - 53202568
Alignment:
Q  46 ccgctccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 94  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  53202616 ccgcaccaccgtacctttccgacgtgcggttgctctctatcgtcgtaaa 53202568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  334 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 399  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 540
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  497 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 24957572 - 24957618
Alignment:
Q  240 ggtggaggttatgtctgctcgcaacataggtggtgattgatcggtca 286  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtca 24957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  334 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 382  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 541  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 186 - 404
Target Start/End: Complemental strand, 20740788 - 20740570
Alignment:
Q  186 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 285  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  20740788 ttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggattggtc 20740689  T
Q  286 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 385  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20740688 acgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttc 20740589  T
Q  386 ttggtggtactgattttgg 404  Q
    |||||||| ||||||||||    
T  20740588 ttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 172 - 404
Target Start/End: Complemental strand, 21881691 - 21881459
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    |||||||||||| |||||||||||||||||| | ||| |||||||||||  ||||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  21881691 atgcttgtcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtg 21881592  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||    
T  21881591 gtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgct 21881492  T
Q  372 tcatggtggttttcttggtggtactgattttgg 404  Q
    ||||||  ||| || ||||||| ||||||||||    
T  21881491 tcatggcagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  481 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 546  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 7766903 - 7767135
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7766903 atgcttgccggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtg 7767002  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    |||||||||||| ||  ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| ||    
T  7767003 gtgattgatcggccacaatggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgct 7767102  T
Q  372 tcatggtggttttcttggtggtactgattttgg 404  Q
    |||||| || |||| |||||||  |||||||||    
T  7767103 tcatggcgggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 18697155 - 18696922
Alignment:
Q  176 ttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggt 273  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| |||| | | |||||||||  ||||||||||||| ||| |||||||||||||||    
T  18697155 ttgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtttgcccgcaacataggtggt 18697056  T
Q  274 gattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttc 373  Q
    ||| |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| ||||    
T  18697055 gatggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttc 18696956  T
Q  374 atggtggttttcttggtggtactgattttggatc 407  Q
    |||| | ||||| ||||| | |||||||||||||    
T  18696955 atggcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 183 - 404
Target Start/End: Original strand, 27169997 - 27170219
Alignment:
Q  183 tggttgtttggttttcgtgggtatcaaactatttgatttctttt-ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 281  Q
    |||||||||||||||||||||| |||  ||||||||||  |||| ||||||||||||||||||||||||||| |||||||||| || |||||||| ||||    
T  27169997 tggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatc 27170096  T
Q  282 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    ||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||| |||    
T  27170097 ggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggt 27170196  T
Q  382 tttcttggtggtactgattttgg 404  Q
    |||| ||||||| || |||||||    
T  27170197 tttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  294 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  481 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 7271995 - 7271894
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||||| ||||||||||||||||  ||||  |   |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7271995 atgcttgtcagtggttgtttggttttattggggct---actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 7271899  T
Q  272 gtgat 276  Q
    |||||    
T  7271898 gtgat 7271894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 41355444 - 41355553
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||| |||||||||||| |||| ||||| | | |  ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  41355444 atgcttgccggtggttgtttagtttccgtggatcttaggctatttgatttgttttctctcttggttgtggtggaggttatatttgctcgcaacataggcg 41355543  T
Q  272 gtgattgatc 281  Q
    ||||| ||||    
T  41355544 gtgatggatc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  333 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  338 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 6030323 - 6030389
Alignment:
Q  210 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||  |||||||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  6030323 actatttgattcgttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgat 6030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 26656895 - 26656829
Alignment:
Q  210 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 26928482 - 26928416
Alignment:
Q  210 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 539  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 543
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  505 taatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 18697356 - 18697327
Alignment:
Q  20 tcttcctcacacaaatttcaaatccgccgc 49  Q
    ||||||||||||||||||||||||||||||    
T  18697356 tcttcctcacacaaatttcaaatccgccgc 18697327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 18697276 - 18697228
Alignment:
Q  46 ccgctccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 94  Q
    |||| |||| |||| ||||||||||||||||||||| | ||||||||||    
T  18697276 ccgcaccaccgtacatttccgacgtgcggttgctctttgtcgtcgtaaa 18697228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 172 - 407
Target Start/End: Complemental strand, 10409049 - 10408814
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  10409049 atgcttgttggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 10408950  T
Q  272 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 371  Q
    ||||| || |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  10408949 gtgatggaacggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 10408850  T
Q  372 tcatggtggttttcttggtggtactgattttggatc 407  Q
    |||||| ||||||  ||||||| || ||||||||||    
T  10408849 tcatggaggttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 180 - 404
Target Start/End: Complemental strand, 5994846 - 5994622
Alignment:
Q  180 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattg 278  Q
    ||||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||| || | || |    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag-tgctaatgg 5994748  T
Q  279 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 378  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||     
T  5994747 atcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggc 5994648  T
Q  379 ggttttcttggtggtactgattttgg 404  Q
    ||| ||| ||||| |  |||||||||    
T  5994647 ggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 224 - 404
Target Start/End: Complemental strand, 6444208 - 6444027
Alignment:
Q  224 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 322  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| |||    
T  6444208 tttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctat 6444109  T
Q  323 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    || ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  6444108 gagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  496 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 10409169 - 10409137
Alignment:
Q  51 ccactgtacctttccgacgtgcggttgctctct 83  Q
    |||||||| ||||||||||||||||||||||||    
T  10409169 ccactgtatctttccgacgtgcggttgctctct 10409137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 172 - 377
Target Start/End: Complemental strand, 34118198 - 34117991
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacatagg 269  Q
    ||||||| |||||||||||| |||||||||| | ||| | |||||||||| |||||||| |||||||||  || |||||||||| |||||||||||||||    
T  34118198 atgcttgccggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtggtagaggttatgtttgctcgcaacatagg 34118099  T
Q  270 tggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggta 369  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  ||||||||     
T  34118098 tggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtg 34117999  T
Q  370 cttcatgg 377  Q
    | ||||||    
T  34117998 cctcatgg 34117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 39708920 - 39709029
Alignment:
Q  172 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 271  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  39708920 atgcttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaatataggtg 39709018  T
Q  272 gtgattgatcg 282  Q
    ||||| |||||    
T  39709019 gtgatggatcg 39709029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 34655171 - 34655070
Alignment:
Q  180 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 279  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34655171 cggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatgga 34655072  T
Q  280 tc 281  Q
    ||    
T  34655071 tc 34655070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 218 - 381
Target Start/End: Original strand, 11407928 - 11408092
Alignment:
Q  218 atttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttc 316  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||| || || ||||||||||| ||| || | ||||     
T  11407928 atttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggtta 11408027  T
Q  317 gcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408028 gcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  291 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 390  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  391 ggtactgattttggatc 407  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 403
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  293 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 392  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  393 tactgattttg 403  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  291 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 381  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 615891 - 615825
Alignment:
Q  210 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||  |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  615891 actatttgattcgttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgat 615825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  481 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  486 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 546  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 538  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 539  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 39708650 - 39708690
Alignment:
Q  46 ccgctccactgtacctttccgacgtgcggttgctctctatc 86  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  39708650 ccgcaccaccgtacctttccgacgtacggttgctctctatc 39708690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 181 - 404
Target Start/End: Complemental strand, 3302790 - 3302567
Alignment:
Q  181 ggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgat 280  Q
    |||||||||||||||||||||| | ||| |||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3302790 ggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagat 3302691  T
Q  281 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 380  Q
    || ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |    
T  3302690 cgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacag 3302591  T
Q  381 ttttcttggtggtactgattttgg 404  Q
    ||||| |||||||  |||||||||    
T  3302590 ttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 485 - 544
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 544  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  331 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 404  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  485 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 544  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 549
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  497 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 549  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 18269711 - 18269764
Alignment:
Q  223 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 276  Q
    |||||||||||| || || ||||||||||||||| ||| |||||||||||||||    
T  18269711 ttttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgat 18269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  330 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 376  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 540
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  497 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 540  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  491 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 543  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University