View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_high_10 (Length: 384)
Name: NF5029_high_10
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_high_10 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 30654132 - 30653774
Alignment:
| Q |
8 |
agcagagacagaaaagctagacagaattgtattgaaaatctcagcatagactcccaacaagccatcagcttcagagtctaatgatctaacacttaataca |
107 |
Q |
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| T |
30654132 |
agcagaggcagaaaaactagacagaattgtatcgaaaatctcagcatagactcccaacaagccatcagcttcaaagtctaatgatctaacacttaataca |
30654033 |
T |
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| Q |
108 |
acaacacatcaagctcaatttagcaatgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaagagaaaaattaaatagag |
207 |
Q |
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| T |
30654032 |
acaacacatcaagctcaatttagcagtgcctctaatttcattttccaaagatcataatcaattttttaaactaaactaaaaaatgcaaaattaaatagag |
30653933 |
T |
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| Q |
208 |
gaaagatggactgatttttggaattaggaatggatttgacaaccaaatatttttggaaaatttccataaacctataatacataatatttatttcaagtta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
30653932 |
gaaagatggactgatttttggaattaggaatggatttgacaaccaaataattttggaaaatatccataaacctatagtacataatatttatttacagtta |
30653833 |
T |
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| Q |
308 |
cacgtgtggcagcatttcatggtaatcaattcaattcagctataaattatcgattatgc |
366 |
Q |
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| T |
30653832 |
cacgtgtggcagcatttcatggtaatcaattcaattcagctataaattatcgattatgc |
30653774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 82 - 285
Target Start/End: Complemental strand, 24728148 - 24727940
Alignment:
| Q |
82 |
agtctaatgatctaacacttaatacaacaacacatcaagctcaattta----gcaatgcctctaacttcattttccaaagaacataatcaattttttaaa |
177 |
Q |
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| T |
24728148 |
agtctaatgatctaacacttaatacaacaacacaccaagctcaatttaattagtaatgcttctaacttcattttccaaagaacataatcaattttttaaa |
24728049 |
T |
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| Q |
178 |
ctaaactaaaaagagaaaaattaaatagaggaaagatgga-ctgatttttggaattaggaatggatttgacaaccaaatatttttggaaaatttccataa |
276 |
Q |
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| T |
24728048 |
ctaaactaaaaaaggcaatattaaatagaggaaagatgaacctgattgttggaattgggaacggatttgaaaaccaaatatttgtggaaaatgttcatga |
24727949 |
T |
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| Q |
277 |
acctataat |
285 |
Q |
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| T |
24727948 |
acttataat |
24727940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 15292542 - 15292443
Alignment:
| Q |
251 |
caaatatttttggaaaatttccataaacctataatacataatatttatttcaagttacacgtgtggcagcatttcatggtaatcaattcaattcagctat |
350 |
Q |
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| T |
15292542 |
caaatatttgtggaaaatattcataaatctata-ta---aatatttatttacaattacacatgcgatagcatttcatggtaatcaattcaattcaactat |
15292447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 15472911 - 15472812
Alignment:
| Q |
251 |
caaatatttttggaaaatttccataaacctataatacataatatttatttcaagttacacgtgtggcagcatttcatggtaatcaattcaattcagctat |
350 |
Q |
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| T |
15472911 |
caaatatttgtggaaaatattcataaatctata-ta---aatatttatttacaattacacatgcgatagcatttcatggtaatcaattcaattcaactat |
15472816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 40058270 - 40058186
Alignment:
| Q |
126 |
tttagcaatgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaagagaaaaattaaatagaggaaa |
211 |
Q |
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| T |
40058270 |
tttagcaatggttctaacttcattttctacactgcataatcaattttttaa-ctaaactaaaaaaggtgaaattaaatagaggaaa |
40058186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 7824 - 7880
Alignment:
| Q |
133 |
atgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaa |
189 |
Q |
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| T |
7824 |
atgcttctaacttcattctctatagaatataatcaatttttaagactaaactaaaaa |
7880 |
T |
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