View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_high_12 (Length: 356)
Name: NF5029_high_12
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 31 - 335
Target Start/End: Complemental strand, 30654464 - 30654160
Alignment:
| Q |
31 |
caaattcatgcttgtagtcgagaaaacacgacaatagagataactcgtccttgaacagaaccatcattgcaggatcaaacaccacccaccagcagttcat |
130 |
Q |
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|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30654464 |
caaattcatgctcgtagtcgagaaaacacgacaatagtggtaactcgtccttgaacagaaccatcattgcaggaccaaacaccacccaccagcagttcat |
30654365 |
T |
|
| Q |
131 |
caccatatatcaaaaataccccataacaacataaactagacctgttaaggaaaaattagatagaattagaagtcagaacttcaactgaattgagttcaaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30654364 |
caccatatatcaaaaataccccataacaacataaactagacctgttaaggaaaaattagatagaattagaagtcagaacttcaactgaattgagttcaaa |
30654265 |
T |
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| Q |
231 |
acagtaacgcacactagctaaacaacaacatcaaaccccaaaactgtaggcatctaatcacatttggaggcaactaagaaaagagtgcaacatgccaaaa |
330 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30654264 |
acagtaacgcacgctagctaaacaacaacatcaaaccccaaaactgtaggcatctaatcacatttggaggcaactaagaaaagagtgcaacatgccaaaa |
30654165 |
T |
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| Q |
331 |
gctat |
335 |
Q |
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||||| |
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| T |
30654164 |
gctat |
30654160 |
T |
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