View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029_high_20 (Length: 292)

Name: NF5029_high_20
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029_high_20
NF5029_high_20
[»] chr8 (3 HSPs)
chr8 (1-275)||(12811754-12812028)
chr8 (28-104)||(34830887-34830963)
chr8 (10-74)||(36350283-36350347)
[»] chr4 (1 HSPs)
chr4 (7-107)||(45671441-45671541)
[»] chr7 (4 HSPs)
chr7 (1-114)||(28470222-28470335)
chr7 (7-108)||(5230011-5230112)
chr7 (13-84)||(28500179-28500250)
chr7 (4-68)||(5251521-5251585)
[»] chr5 (2 HSPs)
chr5 (2-104)||(20543490-20543592)
chr5 (16-68)||(20514719-20514771)
[»] chr2 (3 HSPs)
chr2 (1-62)||(30642895-30642955)
chr2 (4-92)||(5546377-5546465)
chr2 (1-74)||(25524857-25524930)
[»] chr6 (2 HSPs)
chr6 (1-95)||(22611534-22611628)
chr6 (2-83)||(5652925-5653006)
[»] chr1 (2 HSPs)
chr1 (1-83)||(46039609-46039691)
chr1 (1-85)||(15609497-15609581)
[»] chr3 (2 HSPs)
chr3 (25-106)||(249323-249404)
chr3 (1-50)||(47271129-47271178)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 12812028 - 12811754
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812028 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactct 12811929  T
Q  101 atgaatttggaagtgttgggtaannnnnnnatagatctatttattaattgtttgaaagtttcaattttattgtctatttttgtgaggtccaaatcccaat 200  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811928 atgaatttggaagtgttgggtaatttttttatagatctatttattaattgtttgaaagtttcaattttattgtctatttttgtgaggtccaaatcccaat 12811829  T
Q  201 ggttaatagaatcatttattttctttcttatagttttgtattttgggttttgtgatgatgtgaactgagatattg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811828 ggttaatagaatcatttattttctttcttatagttttgtattttgggttttgtgatgatgtgaactgagatattg 12811754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 34830963 - 34830887
Alignment:
Q  28 aaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatga 104  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| | | | || |||||||||||    
T  34830963 aaagcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctccaacagaggaaaactctatga 34830887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 36350283 - 36350347
Alignment:
Q  10 agaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttat 74  Q
    |||||||| ||||| ||||| || |||||| | ||||| || ||||||||||||||||| |||||    
T  36350283 agaaatggcttgcttaagaaggcatatgaattatctgtgctttgtgatgctgaagttgctcttat 36350347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 45671441 - 45671541
Alignment:
Q  7 agaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 106  Q
    |||||||||||| | |||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |||||||    
T  45671441 agaagaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatgaat 45671540  T
Q  107 t 107  Q
    |    
T  45671541 t 45671541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28470222 - 28470335
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactct 100  Q
    ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||||||||  |||| |||||||||||||| || ||||| || || |    
T  28470222 tcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagcttt 28470321  T
Q  101 atgaatttggaagt 114  Q
     |||||||| ||||    
T  28470322 ctgaatttgcaagt 28470335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 5230011 - 5230112
Alignment:
Q  7 agaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 106  Q
    |||||||||||| | || ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| |  ||||| || || |||||||    
T  5230011 agaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaat 5230110  T
Q  107 tt 108  Q
    ||    
T  5230111 tt 5230112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 28500250 - 28500179
Alignment:
Q  13 aatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 84  Q
    ||||||||| | |||||||| | ||| || |||||||||||||||||||||||||| |||||||| ||||||    
T  28500250 aatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctct 28500179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5251521 - 5251585
Alignment:
Q  4 aaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgc 68  Q
    |||||||||| |||  | |||||||||||| ||||| | |||||||| ||||||||| |||||||    
T  5251521 aaaagaagaactggacttctcaagaaagctaatgaaatttctgttctttgtgatgctcaagttgc 5251585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 20543592 - 20543490
Alignment:
Q  2 caaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactcta 101  Q
    |||| |||||||||||  |||| ||||| ||||||||||| ||| | || ||||||||||| ||||| || || ||||||||||||||||| ||||||||    
T  20543592 caaagagaagaaatggaatgctgaagaaggcttatgaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaaactcta 20543493  T
Q  102 tga 104  Q
    |||    
T  20543492 tga 20543490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 20514771 - 20514719
Alignment:
Q  16 ggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgc 68  Q
    |||||||||||||||||| | ||| | |||||||| |||||||||||||||||    
T  20514771 ggtttgctcaagaaagctaaagaaatatctgttctttgtgatgctgaagttgc 20514719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30642955 - 30642895
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctga 62  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  30642955 tcaaagagaagaaatggtttgctcaaaaaagcttatgaactgtctgttc-ctgtgatgctga 30642895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 5546377 - 5546465
Alignment:
Q  4 aaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtgg 92  Q
    |||||||||||||||||| | |||||||| |||||| | |||||||| |||||||| |||||||| |||||  | ||||||||||||||    
T  5546377 aaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttatagtcttctctagccgtgg 5546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25524857 - 25524930
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttat 74  Q
    ||||| ||||||  |||||| |||||||||||| ||||  | ||||| || ||||||||||||||||| |||||    
T  25524857 tcaaagagaagatctggtttactcaagaaagctcatgagatctctgtgctttgtgatgctgaagttgctcttat 25524930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22611534 - 22611628
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaa 95  Q
    ||||| ||||||| ||| ||| | |||||||| | ||| || | |||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  22611534 tcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaagccgtggcaa 22611628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 5652925 - 5653006
Alignment:
Q  2 caaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 83  Q
    |||| |||||||||||  | || ||||||||||||||| | |||||||| ||||||||||||||||| ||||| || |||||    
T  5652925 caaagagaagaaatggacttcttaagaaagcttatgaattatctgttctttgtgatgctgaagttgctcttattatcttctc 5653006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46039691 - 46039609
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctc 83  Q
    ||||| ||||||| ||||||| | |||||||||| |||||| |||||  | ||||||||||||||||| |||||||| |||||    
T  46039691 tcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctc 46039609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15609497 - 15609581
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctcta 85  Q
    ||||||||| | ||||||||| ||||||||||| | ||| ||||| |||| |||||||| || |||||  ||||| | |||||||    
T  15609497 tcaaaaagacgcaatggtttgttcaagaaagctcaagaattgtctattctttgtgatgccgaggttgctgttatcgtattctcta 15609581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 249404 - 249323
Alignment:
Q  25 aagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 106  Q
    ||||||||||||||||| || ||| | ||||||||||||||||| || ||  | ||||| |||||||||| ||| |||||||    
T  249404 aagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaat 249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47271178 - 47271129
Alignment:
Q  1 tcaaaaagaagaaatggtttgctcaagaaagcttatgaactgtctgttct 50  Q
    ||||| ||||| ||||||||  ||||||||||||||||||| ||||||||    
T  47271178 tcaaagagaaggaatggtttaatcaagaaagcttatgaactttctgttct 47271129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University