View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5029_high_23 (Length: 253)
Name: NF5029_high_23
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_high_23 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 16200090 - 16199878
Alignment:
| Q |
32 |
taataaaatgttggtaaactaaaatgaagtttaattacaagaaatatttttattttagctatattttatgagccaaataaacaccatgatatatagaaag |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16200090 |
taataaaacgttggtaaactaaaatgaagtttaattacaagaaatatttttattttagctatactttatgagccaaataaacatcatgatatatagaaag |
16199991 |
T |
|
| Q |
132 |
aagaatgatgttctatgatctaaacggacaaatatggtacatcgatgtacttaagagacatttaacaatttttataattttaatgaaggaatccttgcga |
231 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16199990 |
aagaatgatgttctatgatttaaagggacaaatatgttacatcgatgtacttaagagacatttaacaa---------ttttaatgaaggaatccttgcga |
16199900 |
T |
|
| Q |
232 |
caatagcatgagttattttact |
253 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16199899 |
caatagcatgagttattttact |
16199878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 17156902 - 17156947
Alignment:
| Q |
176 |
atgtacttaagagacatttaacaatttttataattttaatgaagga |
221 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
17156902 |
atgtacttaagagacatttataaattattttaattttaatgaagga |
17156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University