View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_high_7 (Length: 399)
Name: NF5029_high_7
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 31614061 - 31614424
Alignment:
| Q |
1 |
caaatgaaacagaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaagcaggaccacttctcctatcacacttaacct |
100 |
Q |
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| T |
31614061 |
caaatgaaacagaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaaacaggaccacttctcctatcacacttaacct |
31614160 |
T |
|
| Q |
101 |
atacaaaagtgatgacctagtagagagtgacaaaaactatgatggtattaatttcacatcatatataatttgttacatcatttacatgcatcacttatag |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31614161 |
atacaaaagggatgacctagtagagagtgacaaaaactatgatggtattaatttcacatcatatataatttgttacatcattcacatgcatcacttatag |
31614260 |
T |
|
| Q |
201 |
ttcaaatcttatactgagctatgtagcactgacacttcttattgaaagttgtgtctgacatgatagtaatacatgtgattatattcgattaatttatttt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
31614261 |
ttcaaatcttatactgggctatgtagcactgacacttcttattgaaagttatgtctgacacgatagtaacacatgtgattatattcgattaatttatttt |
31614360 |
T |
|
| Q |
301 |
tcaaagtattatgtataaatatgtcaatttcattgttgtgtctagtgtttatgtcagtgttgtg |
364 |
Q |
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| T |
31614361 |
tcaaagtattatgtataaatatgtcaatttcattgttgtgtctagtgtttatgtcagtgttgtg |
31614424 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 35871176 - 35871232
Alignment:
| Q |
256 |
tgacatgatagtaatacatgtgattatattcgattaatttatttttcaaagtattat |
312 |
Q |
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|
| T |
35871176 |
tgacatgataccaacacatgtgattacattcaattactttatttttcaaattattat |
35871232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 24445377 - 24445433
Alignment:
| Q |
256 |
tgacatgatagtaatacatgtgattatattcgattaatttatttttcaaagtattat |
312 |
Q |
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|||||||||| || ||||||||||| |||| |||| ||||||||||||| |||||| |
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| T |
24445377 |
tgacatgataccaacacatgtgattacattcaattactttatttttcaaattattat |
24445433 |
T |
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