View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_high_8 (Length: 396)
Name: NF5029_high_8
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 141 - 387
Target Start/End: Complemental strand, 14581724 - 14581478
Alignment:
| Q |
141 |
gaacaaaatgagatgtatatcttgtccttgccaaactgcagtcctccacnnnnnnngacagtaaactaaatattatatttggtcataaaggcaatttagg |
240 |
Q |
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| T |
14581724 |
gaacaaaatgagatgtatatcttgtccttgccaaactgcagtcctccacaaaaaaagacagtaaactaaatattatatttggtcataaaggcaatttagg |
14581625 |
T |
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| Q |
241 |
gacatataaaatgaattagtgaatcatgccaatcttccatagaagagacatctaattgaaattttgtatcatgactcataaaagggtataaatatgaagg |
340 |
Q |
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| T |
14581624 |
gacatataaaatgaattagtgaatcatgccaatcttccatagaagagacatctaattgaaattttgtatcatgactcataaaagggtataaatatgaagg |
14581525 |
T |
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| Q |
341 |
tcaacataaactttaaacatgggttcccacactttactttttcatct |
387 |
Q |
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| T |
14581524 |
tcaacataaactttaaacatgggttcccacactttactttttcatct |
14581478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 14581851 - 14581774
Alignment:
| Q |
13 |
aatttgaacataatgttggtgatctataatctaatttctaatttgattaactattttttctaccatttaagatgaacta |
91 |
Q |
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| T |
14581851 |
aatttgaacataatgttggtgatctataatctaatttctaatttgattaactattttttc-accatttaagatgaacta |
14581774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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